CF838529

Overview
NameCF838529
Unique NameCF838529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_SCHPO (S-adenosylmethionine decarboxylase proenzyme OS=Schizosaccharomyces pombe GN=spe2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 74/200 (37.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGR----GLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVR--YTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY-----TLEMCMTGLDRKRASVFY 747
            FEG EK LE+ F  P       G     GL+++S++  D++L  A+C ++S +++E +D+Y+LSESS+FV+ +K+I+KTCGTT LL S+P +L++A S+    R +R  Y+R +F++   Q  PH S+ EEV  L      F     ++V+G P N   WH++S  A+  S +         TLE+ MT +  +R+  FY
Sbjct:   20 FEGPEKLLELWFSAPIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIASSVGFD-RPLRIFYSRKNFLYPERQLAPHTSWEEEVRYLQ----LFFPSGCSYVVG-PTNKNHWHLFSDLADDYSLLEDSLDPEDETLEVLMTDMSPERSLQFY 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.550e-25
Identity = 76/207 (36.71%), Postives = 116/207 (56.04%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.550e-25
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.680e-25
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.680e-25
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSIFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.386e-23
Identity = 76/217 (35.02%), Postives = 115/217 (53.00%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLS-VRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS------------ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LE+ F E    +  G   LR++S+   + +L    C I+S+  N+ +D++VLSESS+FV   + I+KTCGTT  L  +  +LKLAE+   + V  + Y+R +F    AQ  PH+ F+EEV  LD  F     +  ++ +GS  N + W++Y+             S E     +P  T+E+ M  LD +  S+FYK   + A   T  SG
Sbjct:    9 FEGVEKLLEIWFEE----SSNGDDDLRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANGYNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDSIF----PNGRSYCLGSM-NLECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIFYKNKFNDANGATVKSG 216          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.448e-20
Identity = 70/207 (33.82%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LE+ F +    A  G   LR + + + D++L+   C I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +L+LA        +++  Y+R +F+    Q +PHR+F EEV  L+  F     +  A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD +    FY     +A  +T  SG
Sbjct:   11 FEGTEKLLELWFSQQD--ASKGSGDLRDIPRFEWDKLLENVHCLIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYCGFDGIQNFFYSRKNFMKPNHQEYPHRNFHEEVEFLNQIF----PNGAAYCMGR-INSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSG 210          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_YEAST (S-adenosylmethionine decarboxylase proenzyme OS=Saccharomyces cerevisiae GN=SPE2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 70/222 (31.53%), Postives = 114/222 (51.35%), Query Frame = 1
Query:  169 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAE-SLSLSVRS----------VRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY------TLEMCMTGLDRKRASVFYKTNESSAAMMTE 783
            S   FEG EK LE+ FF P   +    + LR++   +  EILK  +C ++S    + LD+++LSESSLFV+ +K+ +KTCGTT  L  +  + ++ E  LS + R+          V Y+R  F+F   Q   H+++++EV  L+    KF  +  ++ +G  D +  W++Y    +  +     Y      T E+ MT LD + AS F    E+S   + E
Sbjct:   24 STDAFEGPEKLLEIWFF-PHKKSITTEKTLRNIGMDRWIEILKLVKCEVLSMKKTKELDAFLLSESSLFVFDHKLTMKTCGTTTTLFCLEKLFQIVEQELSWAFRTTQGGKYKPFKVFYSRRCFLFPCKQAAIHQNWADEVDYLN----KFFDNGKSYSVGRNDKSNHWNLYVTETDRSTPKGKEYIEDDDETFEVLMTELDPECASKFVCGPEASTTALVE 240          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_LEIIN (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 75/215 (34.88%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  163 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHF--GK---FG-MDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKR-----ASVFYKTNESSAAM 774
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNE+++SYVL+ESSLFV   ++I+ TCGTT LL SIP IL+   ++   +  V +   ++ F   Q  PH S ++E A L  HF  GK   FG +DS  + +   D+  R      S+E  +       L M M GLD+++     +  F  T+  +AA+
Sbjct:   36 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNILEAISAVRGELEWVSFMHKNYSFPWMQKGPHTSLADEFATLKQHFPTGKPYIFGPVDSDHYFLFCYDDIIR----PCSSEDDTQ------LSMTMYGLDKEQTKHWFSDRFISTSAETAAI 237          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_LEIDO (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania donovani PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 75/215 (34.88%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  163 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHF--GK---FG-MDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKR-----ASVFYKTNESSAAM 774
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNE+++SYVL+ESSLFV   ++I+ TCGTT LL SIP IL+   ++   +  V +   ++ F   Q  PH S ++E A L  HF  GK   FG +DS  + +   D+  R      S+E  +       L M M GLD+++     +  F  T+  +AA+
Sbjct:   26 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNILEAISAVRGELEWVSFMHKNYSFPWMQKGPHTSLADEFATLKQHFPTGKPYIFGPVDSDHYFLFCYDDIIR----PCSSEDDTQ------LSMTMYGLDKEQTKHWFSDRFISTSAETAAI 227          
The following BLAST results are available for this feature:
BLAST of CF838529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_SCHPO8.763e-2637.00S-adenosylmethionine decarboxylase proenzyme OS=Sc... [more]
DCAM_HUMAN2.550e-2536.71S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM1_MOUSE2.550e-2536.71S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM2_MUSSP5.680e-2536.71S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE5.680e-2536.71S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_DROME2.386e-2335.02S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_XENLA1.448e-2033.82S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_YEAST1.226e-1931.53S-adenosylmethionine decarboxylase proenzyme OS=Sa... [more]
DCAM_LEIIN4.359e-1734.88S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]
DCAM_LEIDO4.359e-1734.88S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838529 ID=CF838529; Name=CF838529; organism=Citrus sinensis; type=EST; length=792bp
AAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCT
TAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTC
TCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGC
AAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAG
GCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTA
GGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCT
GCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATA
TGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCA
AAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAG
TTAGCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGG
AAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTG
AGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGC
ACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTA
CTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAG
AGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAA
ACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGC
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