CF838529

Overview
NameCF838529
Unique NameCF838529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 63/196 (32.14%), Postives = 89/196 (45.41%), Query Frame = 1
Query:  163 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRW-HVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFY 747
            P     FEG EKRLEV      +  +    GL +L       ++      IVS  SNE++ SYVL+ESSLFV   ++I+ TCGTT LL ++P +L     +   V  V +   ++ F   Q  PH S +EE   L  +F         F+ G  D+   +  VY          N    L M M GLDR +   ++
Sbjct:   22 PNQGASFEGPEKRLEVIM---RIIDETHSEGLHALGDEVWKGVVGSLNAQIVSKESNEYIRSYVLTESSLFVMRDRIILITCGTTTLLNAVPFVLDAVSDVRGEVEWVSFMHKNYSFPWEQKGPHLSMAEEFNTLRTYF----PSGKPFIFGPVDSDHYFLFVYDDVIRPCETENDT-QLSMTMYGLDRTQTKHWF 209          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_TRYBB (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 64/192 (33.33%), Postives = 89/192 (46.35%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLD---EILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFY 747
            FEG EKRLEV      +     G  +  L  H  D   +++      IVS   NE++ SYVLSESSLFV   +VI+ TCGT  LL  +P I +   ++   V  V +   ++ F   Q  PH S +EE   L  HF         F+ G P ++  + +Y  S       +    L M M GLDR +   +Y
Sbjct:   28 FEGPEKRLEV------IMRVVDGTHVSGLLAHDDDVWQKVIDAICAHIVSREFNEYIRSYVLSESSLFVMKDRVILITCGTITLLNCVPLICEAVSTVCGEVEWVSFMHKNYSFPWEQKGPHLSMAEEFKTLRSHF----PSGQPFIFG-PIDSDHYFLYLDSDVVQPSCSDDAQLSMTMYGLDRNQTKHWY 208          
The following BLAST results are available for this feature:
BLAST of CF838529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_TRYCR4.080e-1532.14S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]
DCAM_TRYBB6.960e-1533.33S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838529 ID=CF838529; Name=CF838529; organism=Citrus sinensis; type=EST; length=792bp
AAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCT
TAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTC
TCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGC
AAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAG
GCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTA
GGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCT
GCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATA
TGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCA
AAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAG
TTAGCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGG
AAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTG
AGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGC
ACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTA
CTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAG
AGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAA
ACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGC
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