CF838532

Overview
NameCF838532
Unique NameCF838532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO_DROPS (Mitochondrial Rho GTPase OS=Drosophila pseudoobscura pseudoobscura GN=Miro PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.282e-38
Identity = 85/226 (37.61%), Postives = 131/226 (57.96%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRR-----LE---------------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            +  VRI++ G+ G GK+SLI++  ++ +P  VPP      +P +  P++VP +I+D  S  +    LG E+ +A  V + Y+ D  ++LD +++ WLP +R      LE               ++ P+++VG K+DL D +   S+    + IM+ F EIE+C+ECSA     + E+FYYAQKAVLHPT PL+  E Q L P C ++L RIF +CD D D  L+D
Sbjct:    9 RKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTSIVDFSSVEQTEETLGLEINKAHVVCIVYSVDDDDSLDRITSHWLPLIRSKCNATLEGDAETEAETEAAGEGLRKPIVLVGNKIDLIDYSTMDSV----LAIMEDFPEIESCVECSAKTLHNISEMFYYAQKAVLHPTSPLYIMEDQELTPACKKSLVRIFKICDTDGDNLLND 230          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO_DROME (Mitochondrial Rho GTPase OS=Drosophila melanogaster GN=Miro PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 81/228 (35.53%), Postives = 128/228 (56.14%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR----------------------RLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            +  VRI++ G+ G GK+SLI++  ++ +P  VPP      +P +  P++VP +I+D  +  +    L  E+ +A  V + YA D  +TLD +++ WLP +R                      R  ++ P+++VG K+DL + +   S+    + IM+ + EIE+C+ECSA     + E+FYYAQKAVLHPT PL+  E Q L   C ++L RIF +CD D D  L+D
Sbjct:    9 RKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIEYSTMDSV----LAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLYMMEEQELTSACKKSLVRIFKICDIDGDNLLND 232          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_YARLI (Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica GN=GEM1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.418e-35
Identity = 88/218 (40.37%), Postives = 127/218 (58.26%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDR-VPITIIDTP--SSVEDRGKLGEELRRADAVVLTYA----CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD------LRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            +RIVVCG++G GKSSLI +   DT+  N+  +LPP  +P+ F   PD  +   I+DT   +S  +   L  E+R+A+ + L Y+    C+R      +S FWLP  R L V +P+++     D       RD  + +S E  M+PI+++F+EIE+CI  SA     + + FY  QKAV+HP  PLFD +   LKP  V AL+R+F L D D+DG LSD
Sbjct:    6 IRIVVCGDEGVGKSSLITSLIKDTYVPNIQKLLPPITIPKGFSSSPDAPLSTVIVDTQFSNSPAEAEHLHREIRQANVIWLVYSDHYSCER------VSIFWLPYFRNLGVNLPIVLCANVFDDVDSWNSRDSERIISDE--MIPILREFKEIESCIRVSAKLNHNINQAFYLCQKAVMHPIAPLFDAKEGKLKPNAVAALQRVFFLSDRDQDGYLSD 215          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO_CAEEL (Mitochondrial Rho GTPase OS=Caenorhabditis elegans GN=K08F11.5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            VRIV+ G++G GK+SL+++   D +   VP  L    +P D  P+ V  +I+D     ED   +  E+R+A+ + + Y+     T+D + T WLP +R+      + PVI+VG K D    N        ++PIM+   E+ETC+ECSA     V E+FYYAQKAV++PT PL+D +++ L  R  +AL R+F +CD D DG LSD
Sbjct:   10 VRIVLIGDEGCGKTSLVMSLLEDEWVDAVPRRLDRVLIPADVTPENVTTSIVDLSIKEEDENWIVSEIRQANVICVVYSVTDESTVDGIQTKWLPLIRQSFGEYHETPVILVGNKSDGTANNTDK-----ILPIMEANTEVETCVECSARTMKNVSEIFYYAQKAVIYPTRPLYDADTKQLTDRARKALIRVFKICDRDNDGYLSD 210          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_YEAST (Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevisiae GN=GEM1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.088e-33
Identity = 86/223 (38.57%), Postives = 120/223 (53.81%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD----------LRDENQQVSLE-----QVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  +R+V+CG++G GKSSLIV+     F   +  VLPP  +P DF   P   P   +   +S  D   L  EL+ AD + L Y CD  E+ D +S FWLP  R L + +PVI+   K D          +  EN    ++     +  +PI+ +F+EI+TCI+ SA  Q  + + FY  Q+A+ HP  PLFD     LKP  V ALKRIF+L D ++D  L D
Sbjct:    3 KETIRVVICGDEGVGKSSLIVSLTKAEFIPTIQDVLPPISIPRDFSSSPTYSPKNTVLIDTSDSDLIALDHELKSADVIWLVY-CDH-ESYDHVSLFWLPHFRSLGLNIPVILCKNKCDSISNVNANAMVVSENSDDDIDTKVEDEEFIPILMEFKEIDTCIKTSAKTQFDLNQAFYLCQRAITHPISPLFDAMVGELKPLAVMALKRIFLLSDLNQDSYLDD 223          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO_CAEBR (Mitochondrial Rho GTPase OS=Caenorhabditis briggsae GN=CBG01740 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.424e-33
Identity = 79/213 (37.09%), Postives = 122/213 (57.28%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDEN-------QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            VRIV+ G++G GK+SL+++   D +   VP  L    +P D  P+ V  +I+D     E+   L  E+R+A+ + + Y+     T++ +   WLP +R+      + P+I+VG K D    N       Q +     ++PIM+   E+ETC+ECSA     V E+FYYAQKAV++PT PL+D +++ L  R  +AL R+F +CD D DG LSD
Sbjct:   10 VRIVLIGDEGCGKTSLVMSLLEDEWVDAVPRRLDRVLIPADVTPENVTTSIVDLSIKEEEDNWLISEMRQANVICVVYSVTDDTTVERIQEKWLPLIRQAFGEYHETPIILVGNKSDGTANNTDKLPSGQSLVSSLQILPIMEANTEVETCVECSARTMKNVSEIFYYAQKAVIYPTRPLYDADTKQLTDRAKKALIRVFKICDRDNDGYLSD 222          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_ASHGO (Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=GEM1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32
Identity = 84/222 (37.84%), Postives = 124/222 (55.86%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF----YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL-------------EQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALS 770
            K  +RIVVCG+KG GKSSLI     D F  N+   LP   +P DF    Y  +  I ++DT +S  D   L +EL+ AD + L YA    ++ + ++ +W+   R L + +PVI+   K D   E  + +L             ++  +PI++ F+E+ETCI+CSA  ++ V + FY  Q+A+ HP  PLFD     LKP  ++ALKRIF+L D D+D  LS
Sbjct:    3 KERIRIVVCGDKGVGKSSLIACLVKDQFIPNLQDALPAVTIPRDFSASPYSPQNTI-LVDTKNS--DLAGLQKELKNADVIWLVYADH--DSYERIALYWMMMFRSLGLNLPVILCRNKSDDGIEYCRSNLTAGGEGDCGTIVEDEEFIPILKAFKEVETCIKCSAKNKLNVNQAFYLCQRAITHPLAPLFDARIGELKPLAIQALKRIFVLSDKDQDDYLS 219          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_KLULA (Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 82/225 (36.44%), Postives = 125/225 (55.56%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVP---ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM----------------MPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            KT +RIVVCG+ G GK+SLI     D F + +  VLPP  +P+DF   R       ++DT +S  D   L +EL+ AD + L Y+    ++ + ++ +W+   R L V +PV++   K D  DE + +S   +M                +PI+++F+E+ETCI+ SA  +  V + FY  Q+ + +P  PLFD     LKP  V ALKR+F+L D D+DG L+D
Sbjct:    3 KTRIRIVVCGDSGVGKTSLIACLVKDQFISWLQDVLPPITIPKDFSSSRYSPENTVVVDTGNS--DLATLHKELKNADVIWLVYSDH--DSYERIALYWMMMFRSLGVNLPVVLCRNKCD--DEVEFLSSANIMDSDDDQLDNKIEDEEFIPILREFKEVETCIKASAKFKFNVNQAFYLCQRTITNPVAPLFDARIGELKPLGVLALKRVFVLSDMDQDGFLND 221          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_SCHPO (Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces pombe GN=gem1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 74/206 (35.92%), Postives = 122/206 (59.22%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR---VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV-SLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALS 770
            VR+V+CG++G GKSSLI     +    ++P V P   +P +  PD    V + ++DT S   +R  L  E+++A+ + L Y+ +   + + +S FWLP  R L V VP+++   K +  D  Q + ++E  M+P++ +F+EIE CI CSAL++I V E+FY  +  V++P  PL+D + + ++   + AL RIF L D + D  LS
Sbjct:    4 VRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSN--PDSNDDVSLVLVDTQSDSNEREYLAAEIKKANVICLVYSDNY--SYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLIDKNNDDLLS 205          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_CANGA (Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=GEM1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.277e-30
Identity = 76/217 (35.02%), Postives = 119/217 (54.84%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF----YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS-------LEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  +R+V+CG+ G GK+SLIV+     F  N+  VLPP  +P DF    Y  +  + +IDT +S  D   +  EL+ AD + L Y+    ++ + +S +W+   R L + +PVI+   K D    N  +         ++  +PI+  F+E++TC++ SA     V + FY  Q+++ +P  PLFD +   LKP  V AL RIF L D D+DG L+D
Sbjct:    3 KETIRVVICGDDGVGKTSLIVSLVKGQFIPNLQAVLPPVTIPRDFSSSPYSPKNTV-LIDTDNS--DPLAIQRELKNADVIWLVYS--DKDSYERISLYWMITFRSLGLNIPVILCKNKCDQYTTNSPLEDFLDTKIEDEEFIPILMAFKEVDTCVKASAKTHFDVNQSFYLCQRSISYPISPLFDAKVGDLKPSAVAALSRIFFLSDEDQDGFLND 214          
The following BLAST results are available for this feature:
BLAST of CF838532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MIRO_DROPS7.282e-3837.61Mitochondrial Rho GTPase OS=Drosophila pseudoobscu... [more]
MIRO_DROME1.052e-3635.53Mitochondrial Rho GTPase OS=Drosophila melanogaste... [more]
GEM1_YARLI4.418e-3540.37Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica ... [more]
MIRO_CAEEL5.770e-3539.32Mitochondrial Rho GTPase OS=Caenorhabditis elegans... [more]
GEM1_YEAST1.088e-3338.57Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevi... [more]
MIRO_CAEBR2.424e-3337.09Mitochondrial Rho GTPase OS=Caenorhabditis briggsa... [more]
GEM1_ASHGO1.571e-3237.84Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=G... [more]
GEM1_KLULA5.971e-3236.44Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis... [more]
GEM1_SCHPO1.019e-3135.92Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces ... [more]
GEM1_CANGA3.277e-3035.02Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838532 ID=CF838532; Name=CF838532; organism=Citrus sinensis; type=EST; length=774bp
CACACTTACACTCCTTTAATCATCTTCGCCGCCGCCACCATCACCACCAC
CGTCCCTTTCTCCTTCTCCTTCCTGAGGTGTCACGTTTTCACCCCCTCTA
CTTCAGTGTTTGTTAAATGGCAAAAGCGTCAGCGGCAAATTCAGGCCCAG
GCGGTAAAACAGGAGTAAGAATTGTTGTATGTGGAGAAAAGGGTACCGGA
AAATCGAGTTTGATTGTGACAGCCGCCGCAGACACTTTTCCCGCCAATGT
CCCACCGGTGTTGCCGCCTACCAGGCTGCCAGAAGACTTCTACCCGGACC
GCGTCCCCATTACCATCATTGATACTCCTTCAAGCGTGGAGGATAGAGGT
AAACTAGGTGAAGAACTCAGGCGGGCTGATGCTGTTGTGCTAACTTATGC
GTGTGATCGACCTGAGACTCTTGATGAATTGAGTACTTTCTGGCTTCCAG
AACTTCGTCGATTAGAGGTGAAAGTGCCAGTTATAGTGGTGGGTTGTAAG
CTTGATTTAAGAGATGAGAACCAGCAGGTGAGCCTGGAACAGGTGATGAT
GCCAATAATGCAACAGTTTCGAGAGATTGAAACTTGCATAGAGTGTTCAG
CATTGAAACAAATTCAGGTCCCCGAGGTTTTCTACTATGCACAGAAGGCA
GTGCTTCATCCAACAGGCCCTTTATTTGACCAGGAATCACAAGCTTTGAA
GCCTCGGTGTGTGAGGGCCTTGAAGCGTATCTTCATTCTTTGTGATCATG
ACAGGGATGGCGCCCTTAGTGATG
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