CF838532

Overview
NameCF838532
Unique NameCF838532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_CANAL (Mitochondrial Rho GTPase 1 OS=Candida albicans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  312 TIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL---RDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALS 770
            TIIDT SS  D   L +EL+RAD + L Y+     T + +S  W+P  R + V +P+I+   K DL      N + +     +P++ +F+EIE  + CSA     V E FY  Q+AV HP  P+FD +   LKP  ++ LKRIF L D D+DG L+
Sbjct:   38 TIIDTSSS--DMTNLQKELKRADVIWLVYSDHY--TYERISLHWMPLFRSMGVNLPIILCANKSDLFPKSKSNLKSTNSDEFVPLINEFKEIEAGVRCSAKNNYNVVEAFYLCQRAVTHPISPIFDAKEGNLKPGAIKPLKRIFWLSDTDQDGYLN 189          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-------MQQFREIETCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ L+++  ++TFP + VP V            + + + + DT    ED  +L     R AD  +L ++     + + +S  W+PELR     VP+I+VG KLDLRD+ Q  +     +PI       +++       IECSA  Q  V  VF  A K VL P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIETC------IECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCV 713
            ++ V  G+   GK+ ++++  ++TFP + VP V            + V + + DT    ED  +L     R AD  +L ++     + + ++  W+PELR     VP+I+VG KLDLRD+ Q        +PI   Q  E++        IECS+  Q  V  VF  A K VL P      ++ +  K RCV
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQPPK---QKKKKKNKNRCV 194          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFREI---ETCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ L+++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + ++  W+PELR     VP+I+VG KLDLRD+   ++     +PI     ++ R++      IECS+  Q  V  VF  A K VL P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFRE---IETCIECSALKQIQVPEVFYYAQKAVLHP 662
            V+ V  G+   GK+ L+++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +S  W+PEL+     VP+++VG KLDLRD+ Q        +PI     ++ R+     T IECS+  Q  V  VF  A + VL P
Sbjct:    7 VKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-------MQQFREIETCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ L+++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +S  W+PEL+     VP+I+VG KLDLRD+ Q        +PI       +++       IECS+  Q  V  VF  A + VL P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQP 180          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 52/187 (27.81%), Postives = 84/187 (44.92%), Query Frame = 3
Query:  126 ASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHP 662
            A+ + S     T ++ V  G+   GK+ L+++  ++TFP + VP V              V + + DT    +         R AD  +L ++     + + ++  W+PELR     VP+++VG K DLRD  Q   +         +Q +E+         IECS+  Q+ V  VF  A K VLHP
Sbjct:    6 AATSTSSATATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLHP 192          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 57/191 (29.84%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIET------CIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRC 710
            ++ V  G+   GK+ ++++  ++TFP + VP V            + V + + DT    ED  +L     R AD  +L ++     + + +S  W+PEL+     VP+I+VG KLDLRD+ Q        +PI   Q  E+         IECS+  Q+ V  VF  A K VL P  P   ++ +A +  C
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP--PKAKKKKKAQRGAC 194          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ ++++  ++TFP + VP V            + V + + DT    ED  +L     R AD  +L ++     + + ++  W+PELR     VP+I+VG KLDLRD+ Q        +PI   Q  E++        IECS+  Q  V  VF  A K VL P
Sbjct:    6 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVLQP 179          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 54/178 (30.34%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIETCI------ECSALKQIQVPEVFYYAQKAVLHPTGP 671
            ++ V  G+   GK+ ++++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +S  W+PELR     VP+++VG KLDLR++ Q +       PI   Q  E++  I      ECS+  Q  V  VF  A K VL P  P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQPPKP 183          
The following BLAST results are available for this feature:
BLAST of CF838532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
GEM1_CANAL8.642e-2339.74Mitochondrial Rho GTPase 1 OS=Candida albicans GN=... [more]
RAC3_ARATH8.964e-1230.86Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC5_ARATH2.608e-1130.21Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC1_LOTJA2.608e-1130.29Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC11_ARATH3.406e-1130.86Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RHO1_PEA4.449e-1129.71Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC9_ARATH4.449e-1127.81Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.449e-1129.84Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC4_ARATH4.449e-1130.86Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC2_LOTJA4.449e-1130.34Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838532 ID=CF838532; Name=CF838532; organism=Citrus sinensis; type=EST; length=774bp
CACACTTACACTCCTTTAATCATCTTCGCCGCCGCCACCATCACCACCAC
CGTCCCTTTCTCCTTCTCCTTCCTGAGGTGTCACGTTTTCACCCCCTCTA
CTTCAGTGTTTGTTAAATGGCAAAAGCGTCAGCGGCAAATTCAGGCCCAG
GCGGTAAAACAGGAGTAAGAATTGTTGTATGTGGAGAAAAGGGTACCGGA
AAATCGAGTTTGATTGTGACAGCCGCCGCAGACACTTTTCCCGCCAATGT
CCCACCGGTGTTGCCGCCTACCAGGCTGCCAGAAGACTTCTACCCGGACC
GCGTCCCCATTACCATCATTGATACTCCTTCAAGCGTGGAGGATAGAGGT
AAACTAGGTGAAGAACTCAGGCGGGCTGATGCTGTTGTGCTAACTTATGC
GTGTGATCGACCTGAGACTCTTGATGAATTGAGTACTTTCTGGCTTCCAG
AACTTCGTCGATTAGAGGTGAAAGTGCCAGTTATAGTGGTGGGTTGTAAG
CTTGATTTAAGAGATGAGAACCAGCAGGTGAGCCTGGAACAGGTGATGAT
GCCAATAATGCAACAGTTTCGAGAGATTGAAACTTGCATAGAGTGTTCAG
CATTGAAACAAATTCAGGTCCCCGAGGTTTTCTACTATGCACAGAAGGCA
GTGCTTCATCCAACAGGCCCTTTATTTGACCAGGAATCACAAGCTTTGAA
GCCTCGGTGTGTGAGGGCCTTGAAGCGTATCTTCATTCTTTGTGATCATG
ACAGGGATGGCGCCCTTAGTGATG
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