CF838532

Overview
NameCF838532
Unique NameCF838532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHPTGP 671
            ++ V  G+   GK+ ++++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +   W+PELR     VPV++VG KLDLRD+ Q +       PI   Q  E++      T IECS+  Q  V  VF  A K  L P  P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVALRPPKP 183          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 52/190 (27.37%), Postives = 86/190 (45.26%), Query Frame = 3
Query:  120 AKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV-SLEQVMMPIMQQFREIETC--------IECSALKQIQVPEVFYYAQKAVL 656
            A A  A  GPG K  ++IV+ G+ G GK+SL++  +  +FP +  P V              V + + DT    ED  +L     +    V++ Y    P + D +   W PE+      +P++++GCK DLR + +Q+  L    +  +   + +  C        +ECSA  +  V +VF  A K  L
Sbjct:    6 ALAQTAAPGPGRKE-LKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQ-EDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFRENVEDVFREAAKVAL 193          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 54/178 (30.34%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHPTGP 671
            ++ V  G+   GK+ ++++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +   W+PELR     VP+++VG KLDLRD+ Q +S     + I   Q  E++      T IECS+  Q  V  VF  A K  L P  P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDVAIKIALRPPKP 183          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFREI---ETCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ ++++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +S  W+PELR     VP+I+VG KLDLRD+ Q        +PI     ++ R++      IECS+  Q  +  VF  A K VL P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFREI---ETCIECSALKQIQVPEVFYYAQKAVLHP 662
            ++ V  G+   GK+ L+++  ++TFP + VP V              V + + DT    ED  +L     R AD  +L ++     + + +S  W+PEL+     VP+++VG KLDLRD+ Q        +PI     ++ R++      IECS+  Q  V  VF  A K VL P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180          
The following BLAST results are available for this feature:
BLAST of CF838532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RAC13_GOSHI4.449e-1130.90Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RHOF_HUMAN5.811e-1127.37Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]
RAC9_GOSHI5.811e-1130.34Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC5_ORYSJ5.811e-1130.29Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU5.811e-1130.29Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838532 ID=CF838532; Name=CF838532; organism=Citrus sinensis; type=EST; length=774bp
CACACTTACACTCCTTTAATCATCTTCGCCGCCGCCACCATCACCACCAC
CGTCCCTTTCTCCTTCTCCTTCCTGAGGTGTCACGTTTTCACCCCCTCTA
CTTCAGTGTTTGTTAAATGGCAAAAGCGTCAGCGGCAAATTCAGGCCCAG
GCGGTAAAACAGGAGTAAGAATTGTTGTATGTGGAGAAAAGGGTACCGGA
AAATCGAGTTTGATTGTGACAGCCGCCGCAGACACTTTTCCCGCCAATGT
CCCACCGGTGTTGCCGCCTACCAGGCTGCCAGAAGACTTCTACCCGGACC
GCGTCCCCATTACCATCATTGATACTCCTTCAAGCGTGGAGGATAGAGGT
AAACTAGGTGAAGAACTCAGGCGGGCTGATGCTGTTGTGCTAACTTATGC
GTGTGATCGACCTGAGACTCTTGATGAATTGAGTACTTTCTGGCTTCCAG
AACTTCGTCGATTAGAGGTGAAAGTGCCAGTTATAGTGGTGGGTTGTAAG
CTTGATTTAAGAGATGAGAACCAGCAGGTGAGCCTGGAACAGGTGATGAT
GCCAATAATGCAACAGTTTCGAGAGATTGAAACTTGCATAGAGTGTTCAG
CATTGAAACAAATTCAGGTCCCCGAGGTTTTCTACTATGCACAGAAGGCA
GTGCTTCATCCAACAGGCCCTTTATTTGACCAGGAATCACAAGCTTTGAA
GCCTCGGTGTGTGAGGGCCTTGAAGCGTATCTTCATTCTTTGTGATCATG
ACAGGGATGGCGCCCTTAGTGATG
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