CF838532
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11 Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 3 Query: 165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHPTGP 671 ++ V G+ GK+ ++++ ++TFP + VP V V + + DT ED +L R AD +L ++ + + + W+PELR VPV++VG KLDLRD+ Q + PI Q E++ T IECS+ Q V VF A K L P P Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVALRPPKP 183
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 52/190 (27.37%), Postives = 86/190 (45.26%), Query Frame = 3 Query: 120 AKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV-SLEQVMMPIMQQFREIETC--------IECSALKQIQVPEVFYYAQKAVL 656 A A A GPG K ++IV+ G+ G GK+SL++ + +FP + P V V + + DT ED +L + V++ Y P + D + W PE+ +P++++GCK DLR + +Q+ L + + + + C +ECSA + V +VF A K L Sbjct: 6 ALAQTAAPGPGRKE-LKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQ-EDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFRENVEDVFREAAKVAL 193
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 54/178 (30.34%), Postives = 84/178 (47.19%), Query Frame = 3 Query: 165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI-MQQFREIE------TCIECSALKQIQVPEVFYYAQKAVLHPTGP 671 ++ V G+ GK+ ++++ ++TFP + VP V V + + DT ED +L R AD +L ++ + + + W+PELR VP+++VG KLDLRD+ Q +S + I Q E++ T IECS+ Q V VF A K L P P Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDVAIKIALRPPKP 183
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 3 Query: 165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFREI---ETCIECSALKQIQVPEVFYYAQKAVLHP 662 ++ V G+ GK+ ++++ ++TFP + VP V V + + DT ED +L R AD +L ++ + + +S W+PELR VP+I+VG KLDLRD+ Q +PI ++ R++ IECS+ Q + VF A K VL P Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 3 Query: 165 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM----QQFREI---ETCIECSALKQIQVPEVFYYAQKAVLHP 662 ++ V G+ GK+ L+++ ++TFP + VP V V + + DT ED +L R AD +L ++ + + +S W+PEL+ VP+++VG KLDLRD+ Q +PI ++ R++ IECS+ Q V VF A K VL P Sbjct: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 The following BLAST results are available for this feature:
BLAST of CF838532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838532 ID=CF838532; Name=CF838532; organism=Citrus sinensis; type=EST; length=774bpback to top |