CF838533

Overview
NameCF838533
Unique NameCF838533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.063e-26
Identity = 71/169 (42.01%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            VLI++ L     ++L +    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G++G EVA R +  GM  I +DP
Sbjct:    9 VLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVI-NAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.063e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.093e-26
Identity = 64/143 (44.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.833e-25
Identity = 66/171 (38.60%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  293 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++A  W+R+ + G  + GKT+ V+G G++G  VA R    G HVIA+DPY
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPY 173          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.895e-24
Identity = 64/170 (37.65%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+VRS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ SVK+ +W R  YVG  L GKTL ++G G++GSE+A+RA+  GM V   DP+
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPF 170          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  293 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY 173          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  293 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY 173          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 53/177 (29.94%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  290 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 790
            KP VLI  K+ + G+ +L E   V+     + +S E L  K+   DAL+     +++ +VF++ A RLK+V    VG DN+D+  AT+ G                          R + +AD  V++G+W++         ++G  + G+T+ ++GFG++G  +ARRAKG GM ++
Sbjct:    2 KPKVLITRKIPENGIKMLREHFEVEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDA-APRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRIL 177          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  290 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 790
            KP V I   + + G+D+L E   V+       +  E L  K+   DAL+     +++ +VF++ A RL++V    VG DNVD+  AT  G                          R + +AD+  ++G+W+R         ++G  + GKT+ ++GFG++G  VARRAKG GM ++
Sbjct:    2 KPKVFITRAIPENGIDMLREHFEVEVWPEEREIPREVLLEKVRDVDALVTMLSERIDGEVFDN-APRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL 177          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  290 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 790
            KP V I   + + G+++L E   V+       +  E+L  K+   DAL+     +++++VFE+ A RL++V    VG DN+D+  AT  G                          R+V + D  V++G+W+R         ++G  L GKT+ ++GFG++G  +ARRAKG  M ++
Sbjct:    2 KPKVFITRAIPENGINMLEEEFEVEVWEEEREIPREKLLEKVKDVDALVTMLSERIDQEVFEN-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRIL 177          
The following BLAST results are available for this feature:
BLAST of CF838533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_PIG1.063e-2642.01D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_MOUSE1.063e-2645.45D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_BOVIN3.093e-2644.76D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MYCLE5.833e-2538.60D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU2.895e-2437.65D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU9.312e-2335.67D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO9.312e-2335.67D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEON4.782e-1929.94Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_THEGJ3.427e-1729.94Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_PYRFU3.427e-1729.38Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838533 ID=CF838533; Name=CF838533; organism=Citrus sinensis; type=EST; length=807bp
AGGACCAACCATCCAAACACGCCACTATTATAAATTCATATTTCTCCATA
CATCTCTCCCGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCG
CTTTAACCACCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTC
CCTCCGTCAGCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTT
CCCCTCTATTCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTC
GTAATAATCGCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGT
TTTGATCGCCGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGT
TCGCCAACGTGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACG
AAGATCTCGCTCTGCGACGCGCTGATCGTGCGCAGCGGCACGAAGGTCAA
TCGCGACGTGTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAG
CCGGTGTTGGTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGT
TGCTTGGTTGTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCA
TGGGATCGCGCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATG
CCTCTGTTAAGGCTGGAAAGTGGCAAAGGAACAAATATGTGGGTGTCTCC
CTTGTGGGTAAAACACTTGCTGTATTGGGATTCGGAAAGGTTGGATCAGA
AGTTGCTCGTCGTGCCAAGGGTCTGGGTATGCATGTCATTGCACATGATC
CGTATGC
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