CF838541

Overview
NameCF838541
Unique NameCF838541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:505..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 2.796e-73
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LV IEQQSPDIAQGVHGH ++RPE+IGAGDQGHMFGYA+DET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYN+NGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP
Sbjct:   97 LVYIEQQSPDIAQGVHGHLSRRPEEIGAGDQGHMFGYASDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 238
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 4.769e-73
Identity = 131/142 (92.25%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LV IEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC+WLRPDGKTQVTVEY NDNGAMVP+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDE TIFHLNP
Sbjct:   93 LVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 6.228e-73
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LV IEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY NDNGAM+P++VHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDEKTIFHLNP
Sbjct:   93 LVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYCNDNGAMIPIKVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 8.134e-73
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE++GAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVT+EY N++GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINESGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.812e-72
Identity = 129/142 (90.85%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LV IEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WL+PDGKTQVTVEY NDNGAM+P+RVHTVLISTQHDETVTNDEIA DLKEH IKPVIPEKYLDEKTIFHLNP
Sbjct:   93 LVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCRWLKPDGKTQVTVEYCNDNGAMIPIRVHTVLISTQHDETVTNDEIARDLKEHAIKPVIPEKYLDEKTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.037e-72
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVT+EY N+ GAMVP RVHTVLISTQHDETVTND+IAADLKEHVIKPVIPEKYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNEGGAMVPERVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.037e-72
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVT+EY N+ GAMVP RVHTVLISTQHDETVTND+IAADLKEHVIKPVIPEKYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNEGGAMVPERVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.272e-72
Identity = 129/142 (90.85%), Postives = 135/142 (95.07%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE++GAGDQG MFGYATDET E MPLSHVLATKLGARLTEVRKN TC+W+RPDGKTQVTVEY N++GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   95 LVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGIMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWVRPDGKTQVTVEYLNEDGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDENTIFHLNP 236
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 6.886e-72
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PEDIGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY ND GAM+P+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLD+ TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.175e-71
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY NDNGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPAKYLDENTIFHLNP 234
The following BLAST results are available for this feature:
BLAST of CF838541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_ATRNU2.796e-7391.55S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_SOLLC4.769e-7392.25S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_SOLTU6.228e-7391.55S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK4_ARATH8.134e-7390.14S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK_SOLBR1.812e-7290.85S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK2_PINCO4.037e-7290.14S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK2_PICSI4.037e-7290.14S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK3_HORVU5.272e-7290.85S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK3_ARATH6.886e-7289.44S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK3_SOLLC1.175e-7189.44S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838541 ID=CF838541; Name=CF838541; organism=Citrus sinensis; type=EST; length=447bp
GCCGATCACTGCACAATTCCTGGTCAATATTGAGCAACAAAGCCCGGATA
TTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGT
GCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGA
ATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCA
CGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAG
ACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCATGGTCCCAGT
CCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAA
ATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATC
CCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATC
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