CF838541

Overview
NameCF838541
Unique NameCF838541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:505..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.175e-71
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY NDNGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPAKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.004e-71
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE+IGAG QGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC+WLRPDGKTQVT+EY ND GAMVP RVHTVLISTQHDETVTND+IAADLK+HVIKPVIPEKYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHFTKRPEEIGAGYQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCAWLRPDGKTQVTIEYRNDGGAMVPERVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPEKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.617e-71
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PEDIGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY N+ GAM+P+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNEGGAMIPIRVHTVLISTQHDETVTNDEIAVDLKEHVIKPVIPAKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.617e-71
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE++GAGDQG MFGYATDET E MPL+H+LATKLGARLTEVRKN TC+WLRPDGKTQVT+EY N+ GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   95 LVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGIMFGYATDETPELMPLTHMLATKLGARLTEVRKNGTCAWLRPDGKTQVTIEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPGKYLDENTIFHLNP 236
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.617e-71
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE++GAGDQG MFGYATDET E MPL+H+LATKLGARLTEVRKN TC+WLRPDGKTQVT+EY N+ GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   95 LVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGIMFGYATDETPELMPLTHMLATKLGARLTEVRKNGTCAWLRPDGKTQVTIEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPGKYLDENTIFHLNP 236
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.299e-70
Identity = 128/142 (90.14%), Postives = 130/142 (91.55%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGHFTKRPE+IGAGDQGHMFGYATDET E MP  HVLATKLGA+LTEVRKN TC WLRP GKTQVTVEY NDNGAMVP RVHTVLISTQHDETV NDEIA DLKEHVIKPVIPEKYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETLELMPKCHVLATKLGAKLTEVRKNGTCPWLRPHGKTQVTVEYRNDNGAMVPERVHTVLISTQHDETVPNDEIAPDLKEHVIKPVIPEKYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.299e-70
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY NDNGAM+P+RVHT+LISTQHDETVTND+IA DLKEHVIKPV+P +YLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMIPLRVHTILISTQHDETVTNDQIAQDLKEHVIKPVVPAEYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.299e-70
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HV ATKLGA+LTEVRKN TC WLRPDGKTQVTVEY NDNGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP +YLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVWATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPSQYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 1.696e-70
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGARLTEVRK+ TC WLRPDGKTQVTVEY N+ GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPV+P +YLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPSQYLDENTIFHLNP 234
[Close]
BLAST of CF838541 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 6.445e-70
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 2 
Query:   20 LVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 445
            LVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLAT+LGA+LTEVRKN TC WLRPDGKTQVTVEY NDNGAMVP+RVHTVLISTQHDE VTN++IA DLKEHVIKPVIP KYLDE TIFHLNP
Sbjct:   93 LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATQLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDEGVTNEQIAQDLKEHVIKPVIPAKYLDENTIFHLNP 234
The following BLAST results are available for this feature:
BLAST of CF838541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_SOLTU1.175e-7189.44S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK3_PICSI2.004e-7189.44S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK4_BRAJU2.617e-7188.73S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK2_HORVU2.617e-7189.44S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK1_HORVU2.617e-7189.44S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK_PINBN1.299e-7090.14S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK2_PETHY1.299e-7086.62S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK1_TOBAC1.299e-7088.03S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_PICSI1.696e-7088.03S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK2_TOBAC6.445e-7087.32S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838541 ID=CF838541; Name=CF838541; organism=Citrus sinensis; type=EST; length=447bp
GCCGATCACTGCACAATTCCTGGTCAATATTGAGCAACAAAGCCCGGATA
TTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGT
GCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGA
ATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCA
CGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAG
ACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCATGGTCCCAGT
CCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAA
ATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATC
CCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATC
back to top