CF838544

Overview
NameCF838544
Unique NameCF838544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7047 contig Csv1_Contig7047:4..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK2_MOUSE (Serine/threonine-protein kinase SIK2 OS=Mus musculus GN=Sik2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKIAK-GRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G Y++   LG G FA V L R+ +T K+                 E+I RE+ +MKM+ H HI++L++VM +KS +Y   +  K GE+F+ +A  GRL E  AR  F Q++SAVD+CH R V HR
Sbjct:   18 GFYDIEGTLGKGNFAVVKLGRH-RTTKTEVAIKIIDKSQLDAVNLEKIYREVQIMKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKVVHR 141          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK3_DANRE (Serine/threonine-protein kinase SIK3 homolog OS=Danio rerio GN=zgc:66101 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = 2
Query:  194 AVIATGNTSKTGDPQPPPQHKRKPERII*LAKLGTYIHIKGKKDRVEMATSNSNGGGDDRPTLLH-GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNK-IAKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            A +++G  +  G P P P  +R P++          +H            ++ +     RP L   G YE+ R +G G FA V LA ++ T K+                 ++I RE+ +MKM++H HI+ L++VM ++  IY   +   GGE+F+  +A GR+ E  AR  F+Q+++AV FCH R + HR
Sbjct:    2 AAVSSGAAAAAGIPNPNPNRER-PQQQQQQQPASAALH----------PVAHRSAAAACRPPLARVGYYEMERTIGKGNFAVVKLATHMIT-KAKVAIKIVDKTQLDDENLKKIFREVQIMKMLRHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKDARRKFKQIVAAVYFCHCRSIVHR 180          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SNF1_CANTR (Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 45/125 (36.00%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKIA-KGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G+Y++ + LG G+F KV LA+++ TG+ +A                +++REIS +++++H HI++L++V+ SK +I   ++   G ELF+ I  +G++ ED AR +FQQ+I+AV++CH   + HR
Sbjct:   50 GRYQIIKTLGEGSFGKVKLAQHVGTGQKVALKIINRKTLAKSDMQGRVEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEFA-GKELFDYIVQRGKMPEDEARRFFQQIIAAVEYCHRHKIVHR 173          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SMKY_MOUSE (Sperm motility kinase Y OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  383 LHGKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKI-AKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            L+ +Y++ R LGHGT+AKV LA++  TG  +A               +   +E ++MK +KH +IV L +V  +K++ Y  M+LV+G EL+  I + G + ED AR  F Q++SAV +CH  G+ HR
Sbjct:   24 LYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCF----QPAMKEANIMKKIKHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLGIVHR 146          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK2_PONAB (Serine/threonine-protein kinase SIK2 OS=Pongo abelii GN=SIK2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKIAK-GRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G Y++   LG G FA V L R+  T K+                 E+I RE+ +MKM+ H HI++L++VM +KS +Y   +  K GE+F+ +A  GRL E  AR  F Q++SAVD+CH R + HR
Sbjct:   18 GFYDIEGTLGKGNFAVVKLGRHRIT-KTEVAIKIIDKSQLDAVNLEKIYREVQIMKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKIVHR 141          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK2_HUMAN (Serine/threonine-protein kinase SIK2 OS=Homo sapiens GN=SIK2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKIAK-GRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G Y++   LG G FA V L R+  T K+                 E+I RE+ +MKM+ H HI++L++VM +KS +Y   +  K GE+F+ +A  GRL E  AR  F Q++SAVD+CH R + HR
Sbjct:   18 GFYDIEGTLGKGNFAVVKLGRHRIT-KTEVAIKIIDKSQLDAVNLEKIYREVQIMKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKIVHR 141          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: PAR1_CAEEL (Serine/threonine-protein kinase par-1 OS=Caenorhabditis elegans GN=par-1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFN-KIAKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            GKY+L + +G G FAKV LA+++ TG  +A               +++ RE+ +MK + H +IV+L++VM ++  +Y  ++   GGE+F+  +A GR++E  AR  F+Q++SAV + HS+ + HR
Sbjct:  168 GKYKLLKTIGKGNFAKVKLAKHVITGHEVAIKIIDKTALNPSSL-QKLFREVKIMKQLDHPNIVKLYQVMETEQTLYLVLEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYLHSKNIIHR 291          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: PAR1_CAEBR (Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae GN=par-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFN-KIAKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            GKY+L + +G G FAKV LA+++ TG  +A               +++ RE+ +MK + H +IV+L++VM ++  +Y  ++   GGE+F+  +A GR++E  AR  F+Q++SAV + HS+ + HR
Sbjct:  126 GKYKLLKTIGKGNFAKVKLAKHVITGHEVAIKIIDKTALNPSSL-QKLFREVKIMKQLDHPNIVKLYQVMETEQTLYLVLEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYLHSKNIIHR 249          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK2_CHICK (Serine/threonine-protein kinase SIK2 OS=Gallus gallus GN=SIK2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  389 GKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKI-AKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G Y++ R LG G FA V LAR+  T K+                 E+I RE+ +MK++ H HI++L++VM +K  +Y   +  K GE+F+ + + G L E  AR  F Q++SAV++CHS  + HR
Sbjct:   24 GFYDIERTLGKGNFAVVKLARHRVT-KTQVAIKIIDKTRLDPSNLEKIYREVQIMKLLNHPHIIKLYQVMETKDMLYIVTEFAKNGEMFDHLTSNGHLSESEARKKFWQILSAVEYCHSHHIVHR 147          
BLAST of CF838544 vs. ExPASy Swiss-Prot
Match: SIK1_HUMAN (Serine/threonine-protein kinase SIK1 OS=Homo sapiens GN=SIK1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  356 GGGDDRPTLLHGKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGELFNKI-AKGRLREDVARVYFQQLISAVDFCHSRGVYHR 760
            G G  +P L  G Y++ R LG G FA V LAR+  T K+                 E+I RE+ +MK++ H HI++L++VM +K  +Y   +  K GE+F+ + + G L E+ AR  F Q++SAV++CH   + HR
Sbjct:   15 GQGQQKP-LRVGFYDIERTLGKGNFAVVKLARHRVT-KTQVAIKIIDKTRLDSSNLEKIYREVQLMKLLNHPHIIKLYQVMETKDMLYIVTEFAKNGEMFDYLTSNGHLSENEARKKFWQILSAVEYCHDHHIVHR 148          
The following BLAST results are available for this feature:
BLAST of CF838544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
SIK2_MOUSE1.658e-1840.80Serine/threonine-protein kinase SIK2 OS=Mus muscul... [more]
SIK3_DANRE2.165e-1830.89Serine/threonine-protein kinase SIK3 homolog OS=Da... [more]
SNF1_CANTR2.828e-1836.00Carbon catabolite-derepressing protein kinase OS=C... [more]
SMKY_MOUSE6.300e-1838.58Sperm motility kinase Y OS=Mus musculus PE=2 SV=1[more]
SIK2_PONAB6.300e-1840.00Serine/threonine-protein kinase SIK2 OS=Pongo abel... [more]
SIK2_HUMAN6.300e-1840.00Serine/threonine-protein kinase SIK2 OS=Homo sapie... [more]
PAR1_CAEEL1.075e-1736.00Serine/threonine-protein kinase par-1 OS=Caenorhab... [more]
PAR1_CAEBR1.075e-1736.00Serine/threonine-protein kinase par-1 OS=Caenorhab... [more]
SIK2_CHICK1.404e-1737.60Serine/threonine-protein kinase SIK2 OS=Gallus gal... [more]
SIK1_HUMAN1.404e-1736.76Serine/threonine-protein kinase SIK1 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838544 ID=CF838544; Name=CF838544; organism=Citrus sinensis; type=EST; length=762bp
AACACTCCCGCGTATACACCATCACCATCTATAAGCGTTTGATTAATAGC
AGCAAATCAAAATCCTTATCGTCTCCCCCCAAGAAAAAATAAATAAGCAA
ACACTAAAAGCCCCTTCAGGGAATGCAGAGAGATGAGAGGACCTTCGTTG
AGATTGCCTGAGCTGTGTTTACGTGCCCAGCGGTGCGTCGGCGGCCGTAA
TTGCCACCGGAAACACGTCGAAGACGGGTGATCCTCAACCACCACCACAA
CACAAAAGAAAACCTGAAAGAATTATTTAATTAGCTAAACTTGGTACATA
TATACATATAAAAGGAAAAAAAGACCGCGTGGAGATGGCTACATCAAACA
GTAACGGCGGAGGCGATGACAGGCCGACGTTGCTACATGGGAAATACGAG
CTGGGGCGTATGTTAGGCCACGGAACCTTCGCGAAGGTGTACCTGGCAAG
AAATTTGCAGACGGGGAAAAGCATGGCCATGAAAGTTGTTGGTAAAGACA
AGGTTATCAAGGTGGGCATGATGGAGCAAATCAAGCGTGAAATCTCTGTC
ATGAAGATGGTGAAGCACAAGCACATCGTTGAGCTACACGAAGTCATGGC
AAGTAAGTCCAAGATTTACTTCGCCATGGACCTCGTCAAAGGCGGCGAGC
TGTTCAACAAGATTGCCAAAGGAAGATTACGAGAAGATGTTGCAAGGGTT
TATTTCCAGCAGCTGATTTCAGCCGTTGATTTCTGCCACAGCCGCGGCGT
TTATCACCGCGA
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