CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALL-TNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD + +  + ++  +P+P   F+ +   FN++GL + D+V LSG HTIG S CT F  RLYN +GNG  D +L+  YAA L+ +C         +ELD  S  +FD+ Y+  LIEN GL  SD  L  +N+ +R +V +   +Q++FF +FA+SM +MG ++ LTG+ GEIRK C  INN
Sbjct:  156 GRRDSTSASLSGSNNNIPAPNNTFNTIVTRFNNQGLDLTDVVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDRTLEQSYAANLRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDEVLFSSNEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINN 337          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER71_ARATH (Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.270e-34
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            QV TGRRDG VS+A+ A+ L P P  + +  ++ F+  GL  +DLVVL GGHTIG + C  F NRL+N TG    DP++DP + A L+T+C    D +   +LD GS   +D+ YY+ L   +G+ QSD  L T+   R IV +L   +  F  EFA+SM RM  + V+TG  GEIR+ CS +N
Sbjct:  147 QVPTGRRDGRVSLASNANNL-PGPRDSVAVQQQKFSALGLNTRDLVVLVGGHTIGTAGCGVFRNRLFNTTGQ-TADPTIDPTFLAQLQTQCPQNGDGSVRVDLDTGSGSTWDTSYYNNLSRGRGVLQSDQVLWTDPATRPIVQQLMAPRSTFNVEFARSMVRMSNIGVVTGANGEIRRVCSAVN 328          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.278e-33
Identity = 78/186 (41.94%), Postives = 108/186 (58.06%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGN-GDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR---NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            VL GRRDG  +I A+A   LP    +   L   F+   L   DLV LSG HT G   C   +NRL+NF+GN G  DPS++P +   L+ +C    D T  A LDP S   FD+ Y+  L  N+G+ +SD  L ++ GA  + +  R   NQ++FFT FA+SM +MG + +LTG +GEIR+ C  +N
Sbjct:  144 VLLGRRDGRTAIRADAVAALPLGPDSLEILTSKFSVHNLDTTDLVALSGAHTFGRVQCGVINNRLHNFSGNSGQSDPSIEPEFLQTLRRQCPQGGDLTARANLDPTSPDSFDNDYFKNLQNNRGVIESDQILFSSTGAPTVSLVNRFAENQNEFFTNFARSMIKMGNVRILTGREGEIRRDCRRVN 329          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.591e-33
Identity = 77/182 (42.31%), Postives = 110/182 (60.44%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALL-TNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD   +  ++++  +P+P   F  +   FN +GL + DLV LSG HTIG S CT F  RLYN +GNG  D +L+  +AA L+ +C         + LD  S   FD+ Y+  LIENKGL  SD  L  +N+ +R +V +   +Q +FF +FA+SM +MG ++ LTG+ GEIRK C  IN+
Sbjct:  150 GRRDSRSASLSQSNNNIPAPNNTFQTILSKFNRQGLDITDLVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDMTLEQSFAANLRQRCPKSGGDQILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLFSSNEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINS 331          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_ARAHY (Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.591e-33
Identity = 80/188 (42.55%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFF-----TEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            QV TGRRDG VS A++   L P+P  +    K+ F  KGL  +DLV L GGHTIG S C FFSNRL+NF G    DP++DP + + L+  C           LD GS  KFD+ Y+  L   +G+ QSD AL  +   ++ V        F       EF +SM +M  + V TGT GEIRK CS  N
Sbjct:  144 QVPTGRRDGRVSQASDVSNL-PAPSDSVDVQKQKFAAKGLNTQDLVTLVGGHTIGTSECQFFSNRLFNFNGTAAADPAIDPSFVSNLQALCPQNTGAANRVALDTGSQFKFDTSYFSNLRNRRGVLQSDQALWNDPSTKSFVQRYLGLRGFLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSAFN 330          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.246e-32
Identity = 81/183 (44.26%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR---NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRD   +  A A+  LPSPF N ++LK  F D GL    DLV LSGGHT G + C F + RLYNF G    DPSL+P Y   L+  C    + T     D  +   FDS YY  L   KGL QSD  L +  GA  I +  +   +   FF  F  +M RMG +  LTGTQGEIR+ C V+N
Sbjct:  151 GRRDSVEAFFALANTALPSPFFNLTQLKTAFADVGLNRTSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNSPDPSLNPTYLVELRRLCPQNGNGTVLVNFDVVTPDAFDSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.246e-32
Identity = 78/181 (43.09%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME---LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKC 549
            VL GRRD   +    A+  LPSPF N + L + F + GL V DLV LSG HT G + C  FS RL+NF+  G+ DP+L+  Y A L+  C       T   LDP +   FD++Y+  L  N+GL QSD  L +  GA  I +      NQ  FF  F QSM  MG ++ LTG+ GEIR  C
Sbjct:  143 VLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVNDLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNC 323          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.125e-32
Identity = 80/183 (43.72%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR---NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRD   +  A A+  LPSPF+  ++LK  F D GL    DLV LSGGHT G + C F + RLYNF G    DPSL+P Y   L+  C    + T     D  +   FD  YY  L+  KGL QSD  L +  GA  I +  +   N   FF  F  +M RMG +  LTGTQGEIR+ C V+N
Sbjct:  151 GRRDSVEAFFALANTALPSPFSTLTQLKTAFADVGLNRPSDLVALSGGHTFGKAQCQFVTPRLYNFNGTNRPDPSLNPTYLVELRRLCPQNGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.054e-31
Identity = 80/184 (43.48%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIV---MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD   +    A+  LPSPF   ++LKK F D GL    DLV LSGGHT G + C F + RLYNF G    DP+LDP Y   L+  C    + T     D  +   FD  YY  L   KGL QSD  L +  GA  I    +   N   FF  F  +M RMG +  LTGTQGEIR+ C V+N+
Sbjct:  151 GRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNRPDPTLDPTYLVQLRALCPQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNS 334          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 80/184 (43.48%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIV---MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD   +    A+  LPSPF   ++LKK F D GL    DLV LSGGHT G + C F + RLYNF G    DP+L+P Y A L+  C    + T     D  +   FD+ +Y  L   KGL QSD  L +  GA  I    +   N   FF  FA +M RMG +  LTGTQGEIR+ C V+N+
Sbjct:  122 GRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRARCLFVTARLYNFNGTNRPDPTLNPSYLADLRRLCPRNGNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVNS 305          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER15_ARATH1.331e-3442.86Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER71_ARATH2.270e-3444.57Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=... [more]
PER58_ARATH3.278e-3341.94Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER49_ARATH5.591e-3342.31Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PER2_ARAHY5.591e-3342.55Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 ... [more]
PER22_ARATH1.246e-3244.26Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER15_IPOBA1.246e-3243.09Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER23_ARATH2.125e-3243.72Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER3_ARMRU1.054e-3143.48Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PERE5_ARMRU1.377e-3143.48Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
back to top