CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.337e-18
Identity = 63/185 (34.05%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVL-SGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTE-FAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            V TGRRDG  S     D+ LP P    S   + F  +G+   D+V L  GGH++GV+HC+ F +RL         D +++P   + L+ KC S  D TT   LD  +    D+  Y  +   +G+ + D  L  ++    IV    + +  F + FA+++ +MG + VLTG  GEIR+ C V NN
Sbjct:  138 VPTGRRDGLRS--NPNDVNLPGPTIPVSASIQLFAAQGMNTNDMVTLIGGGHSVGVAHCSLFQDRL--------SDRAMEPSLKSSLRRKCSSPNDPTTF--LDQKTSFTVDNAIYGEIRRQRGILRIDQNLGLDRSTSGIVSGYASSNTLFRKRFAEALVKMGTIKVLTGRSGEIRRNCRVFNN 310          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.337e-18
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAAL-LTNKGARNIV-MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V  GR+D   +    A   LPSP +  S L   F + GL+  D+V LSGGHT+G + CT F+ RL         +   +  +   L+  C ++  +    +LD  +   FD+ YY  L+  +GL  SD AL + + G R IV     +Q  FF +F  +M +MG   +  G+  EIRK C +IN
Sbjct:  166 EVEVGRKDSRTASKQAATNGLPSPNSTVSTLISTFQNLGLSQTDMVALSGGHTLGKARCTSFTARLQPLQTGQPANHGDNLEFLESLQQLCSTVGPSVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPGTRAIVETYATDQSVFFEDFKNAMVKMG--GIPGGSNSEIRKNCRMIN 348          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.478e-17
Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = 1
Query:   25 GRRDG-SVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAEL----DPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GR+D  S      AD  LP   A+       F +KG+T+++ V + G HTIGV+HC   +N L  F        ++DPR+  FL+  C   + T+  AE     +  +   FD+ YYD  I  +G  + D+ +  +   R  V     +QD+FF  F+ +  ++ +  VLTG +G IR  C  ++
Sbjct:  158 GRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIEESVAIMGAHTIGVTHC---NNVLSRFDNANATSENMDPRFQTFLRVACPEFSPTSQAAEATFVPNDQTSVIFDTAYYDDAIAGRGNLRIDSEIGADPRTRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCDKVD 339          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.521e-17
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +  GR+D   +    A+  LP+PF N S     F DKG   +++VVL+G HT+G S C                  +L+   +A L+  C + A+ T    LDP S   FD  Y++ L++ +GL  SD  L+ +      V   R+    F T+FA +M +M  +    G Q EIR  CS +N
Sbjct:  178 ITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVLCT-----------STNLNQNRSATLQCTCPASANDTGLVGLDP-SPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTAVRRYRDATGAFLTDFAAAMVKMSNLPPSAGVQLEIRNVCSRVN 348          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.866e-15
Identity = 57/183 (31.15%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQ-DKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GR D   +    A   LP+PF N +   + FNDK  T++++V L+G HT+G + C+           +G+ +P      AA L+  C +    +   +LD  +   FD  YYD L  N+G+  SD  L  +      V +  N    F  +FA +M +MG +    G Q EIR  CS +N
Sbjct:  188 VALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARCS-------TVCTSGNVNP------AAQLQCNCSATLTDSDLQQLDT-TPTMFDKVYYDNLNNNQGIMFSDQVLTGDATTAGFVTDYSNDVSVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 356          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.998e-14
Identity = 56/183 (30.60%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQ-DKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GR D   +  + A   LP+PF N +   + F+DK  T++++V L+G HT+G + C+           +G+ +P      AA L+  C +    +   +LD  +   FD  YYD L  N+G+  SD  L  +      V +  N  + F  +FA +M +MG +    G Q EIR  CS +N
Sbjct:  189 VALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCS-------TVCTSGNVNP------AAQLQCNCSATLTDSDLQQLDT-TPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 357          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTE-FAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GR D + +  + A   LP+P  N +   + F+DK  TV+++V L+G HT+G + C+           +G+ +P      AA L+  C +    +   +LD  +   FD  YYD L  N+G+  SD  L  N      V    N    F E FA +M +MG +    G Q EIR  CS +N
Sbjct:  188 VALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARCS-------TVCTSGNVNP------AAQLQCNCSATLTDSDLQQLDT-TPAVFDKVYYDNLNNNQGIMFSDQVLTGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVN 356          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER11_ARATH (Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 60/193 (31.09%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDP---RYAAFLKTKCKSLA---DTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNK---GARNIVMELRNQD-KFFTEFAQSMKRMG-AMNVLTGTQGEIRKKCSVIN 561
            V  GR+D   +    A   LP+P      +   F  +GL+V+D+V L G HTIG + C  F +R+Y   G+     +L+P    Y A L+  C + +   D+  TA +D  +   FD+  Y  L+  +GL  SD  + T+      R IV +       FF +F++SM +MG  +N  +   GE+R+ C  +N
Sbjct:  147 VPVGRKDSKTASYELATTNLPTPEEGLISIIAKFYSQGLSVEDMVALIGAHTIGKAQCRNFRSRIY---GDFQVTSALNPVSETYLASLREICPASSGEGDSNVTA-IDNVTPNLFDNSIYHTLLRGEGLLNSDQEMYTSLFGIQTRRIVSKYAEDPVAFFEQFSKSMVKMGNILNSESLADGEVRRNCRFVN 335          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER44_ARATH1.337e-1834.05Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER40_ARATH1.337e-1833.51Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER29_ARATH1.478e-1730.81Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PERN_IPOBA2.521e-1731.69Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PERX_SOLTU6.866e-1531.15Suberization-associated anionic peroxidase OS=Sola... [more]
PER1_SOLLC1.998e-1430.60Suberization-associated anionic peroxidase 1 OS=So... [more]
PER2_SOLLC3.408e-1431.69Suberization-associated anionic peroxidase 2 OS=So... [more]
PER11_ARATH3.408e-1431.09Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
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