CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER25_ARATH (Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 73/189 (38.62%), Postives = 106/189 (56.08%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQ------DKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V TGR+DG +S+A EA  L PSP  + +  K+ F DKGL   DLV L G HTIG + C FF  RLYNFT  G+ DP++ P +   LKT C    D +    LD GS  KFD  ++  L +   + +SD  L ++     +V +  ++       +F  EF ++M +M +++V T   GE+RK CS +N
Sbjct:  141 RVPTGRKDGRISLATEASNL-PSPLDSVAVQKQKFQDKGLDTHDLVTLLGAHTIGQTDCLFFRYRLYNFTVTGNSDPTISPSFLTQLKTLCPPNGDGSKRVALDIGSPSKFDESFFKNLRDGNAILESDQRLWSDAETNAVVKKYASRLRGLLGFRFDYEFGKAMIKMSSIDVKTDVDGEVRKVCSKVN 328          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 73/185 (39.46%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME---LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            VL GRRD   +  A A+  +PSPF   S +   F+  GL   DLV LSG HT G + C  F+NRL+NF+G    DP+L+    + L+  C      +T   LD  +   FD++Y+  L  N GL QSD  L +  G+  I +      NQ  FF  FAQSM  MG ++ LTG+ GEIR  C  ++
Sbjct:  119 VLLGRRDSLTANLAGANSAIPSPFEGLSNITSKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTNGPDPTLNSTLLSSLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVD 303          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER55_ARATH (Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGAR-NIVMELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V  GRRDG VS A+     LP P  +   L + F   GL++ D++ LSG HTIG SHC  F+NRL+NF+     DP++DP YA  L   C S  +     ++D  S   FD+ YY  L+  KGLF SD AL  +  ++  +V    N ++F++ F+ +M+ +G + V  G QGEIR+ CS  N
Sbjct:  148 KVELGRRDGLVSKASRVTGKLPEPGLDVRGLVQIFASNGLSLTDMIALSGAHTIGSSHCNRFANRLHNFSTFMPVDPTMDPVYAQQLIQAC-SDPNPDAVVDIDLTSRDTFDNSYYQNLVARKGLFTSDQALFNDLSSQATVVRFANNAEEFYSAFSSAMRNLGRVGVKVGNQGEIRRDCSAFN 330          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 78/198 (39.39%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN----QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLLHSSI 591
            +V  GRRD   +    A+  LP+P     ELK  F + GL    DLV LSGGHT G + C F  +RLYNF+  G  DP+L+  Y   L+ +C    + +   + D  +   FD+ YY  L E KGL QSD  L ++  A + +  +R+       FF  F ++M RMG +  LTGTQGEIR  C V+N+ +SLLH  +
Sbjct:  127 RVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNS-NSLLHDIV 323          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 77/198 (38.89%), Postives = 109/198 (55.05%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLLHSSI 591
            +V  GRRD   +    A+  LP+PF    +LK +F + GL    DLV LSGGHT G + C F  +RLYNF+  G  DP+L+  Y   L+  C    + +   + D  +   FD+ YY  L E KGL QSD  L ++  A + +  +R    +   FF  F ++M RMG +  LTGTQG+IR  C V+N+ +SLLH  +
Sbjct:  148 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS-NSLLHDMV 344          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.683e-29
Identity = 68/180 (37.78%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTE-FAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRDG  S A+     LP P  + ++L   F + GL+  D++ LSG HT+G +HCT   NRLYNF    + DP+++  Y   LK  C    D      +DP + R+FD+ YY  L + KGLF SD  L T+  ++  V    N  + F + F  SM ++G + V TG+ G IR+ C   N
Sbjct:  150 GRRDGLSSSASSVTGKLPKPTFDLNQLNALFAENGLSPNDMIALSGAHTLGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNIDPRVAINMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFTDSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.199e-29
Identity = 75/194 (38.66%), Postives = 106/194 (54.64%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLL 579
            +V +GRRD        A+  LP P +    LK  F + GL    DLV LSGGHT G + C F  +RLYNF+ +G  DP+LD  Y + L+ +C    + +   + D  +   FD+ YY  L ENKGL QSD  L ++  A + +  +R     Q KFF  F ++M RMG ++  TG QGEIR  C V+N+   ++
Sbjct:  142 KVPSGRRDSLRGFMDLANDNLPGPSSTLQVLKDKFRNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPDPTLDKSYLSTLRKQCPRNGNLSVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNSKPKIM 335          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 80/182 (43.96%), Postives = 110/182 (60.44%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLL--LPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR-NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRD S++ A++   L  LP PF N S+L  +F ++ L + DLV LSGGHTIG++HC  F++RLY      +QDP+++  +A  LK  C + A+++ T   D  S   FD+ YY  L+  +GLF SD  L  +K  R IV     +Q  FF  F  +M +MG M+VLTGTQGEIR  CS  N
Sbjct:  165 GRRD-SLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFTDRLY-----PNQDPTMNQFFANSLKRTCPT-ANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.750e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLLHSSI 591
            +V  GRRD   +    A+  LP+PF    +LK NF + GL    DLV LSG HT G + C F  +RLYNF+  G  DP+L+  Y   L+ +C    + +   + D  +   FD+ YY  L E KGL QSD  L ++  A + +  +R        FF  F ++M RMG +   TGTQG+IR  C V+N+ +SLLH  +
Sbjct:  149 KVPLGRRDSLQAFLDLANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQSVLVDFDLRTPLVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNS-NSLLHDVV 345          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 73/186 (39.25%), Postives = 107/186 (57.53%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFT-GNGDQ-DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            ++ TGRRDG  S+AA     +        ++   F+ KGL+++DLVVLSG HTIG SHC  F+ R    + GN +  D SLD  YA  L  KC S   ++ T   DP +   FD+ YY  L  +KGLFQ+D+AL+ +   R +V EL  +++ FF  +++S  ++  + V  G  GEIR+ CS +N
Sbjct:  141 EIPTGRRDGKESMAANVRPNIIDTDFTLDQMIDAFSSKGLSIQDLVVLSGAHTIGASHCNAFNGRFQRDSKGNFEVIDASLDNSYAETLMNKCSSSESSSLTVSNDPETSAVFDNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER25_ARATH5.786e-3038.62Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=... [more]
PERA2_ARMRU7.556e-3039.46Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER55_ARATH1.289e-2939.67Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=... [more]
PER1C_ARMRU1.289e-2939.39Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER1A_ARMRU1.289e-2938.89Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER51_ARATH1.683e-2937.78Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER2_ARMRU2.199e-2938.66Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER12_ARATH2.871e-2943.96Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER33_ARATH3.750e-2938.38Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER46_ARATH6.397e-2939.25Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
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