CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLLHSSI 591
            +V  GRRD   +    A+  LP+PF    +LK +F + GL    DLV LSGGHT G + C F  +RLYNF+  G  DP+L+  Y   L+  C    + +   + D  +   FD+ YY  L E KGL QSD  L ++  A + +  +R        FF  F ++M RMG +   TGTQG+IR  C V+N+ +SLLH  +
Sbjct:  148 RVPLGRRDSLQAFLELANANLPAPFFTLPQLKASFRNVGLDRPSDLVALSGGHTFGKNQCQFILDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNRSALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNS-NSLLHDVV 344          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.425e-28
Identity = 75/187 (40.11%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQD-----KFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V TGRRDG VS AA+A  L P+ F +    K+ F  KGL  +DLV L+G HTIG + C    +RL+NF   G  DPS+D  +   L+  C    D +    LD GS   FD+ Y+  L   +G+ +SD  L T+   +  V             F  EF +SM +M  + V TGT GEIRK CS IN
Sbjct:  145 VPTGRRDGRVSRAADAGDL-PAFFDSVDIQKRKFLTKGLNTQDLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQNGDASRRVGLDTGSVNNFDTSYFSNLRNGRGVLESDQKLWTDASTQVFVQRFLGIRGLLGLTFGVEFGRSMVKMSNIEVKTGTNGEIRKVCSAIN 330          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.431e-28
Identity = 69/183 (37.70%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQD----KFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GR DG +S+A+  +++LP P  + +  K  F +K L  +DLVVL+ GHTIG + C  F +R +N+   G  DP++ P +   ++ +C    D  T   LD GS  +FD+ Y + L   +GL +SD  L TN   R IV  L         F  EFA+SM +M  + + TG  GEIR+ CS +N
Sbjct:  150 GRLDGRISLAS--NVILPGPTDSVAVQKLRFAEKNLNTQDLVVLAAGHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVLDTGSGDQFDTSYLNNLKNGRGLLESDQVLWTNLETRPIVERLLGLRFPFLIFGLEFARSMTKMSQIEIKTGLDGEIRRVCSAVN 330          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.431e-28
Identity = 75/193 (38.86%), Postives = 103/193 (53.37%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINNPDSLL 579
            V  GRRD        A+  LP P +   +LK  F + GL    DLV LSGGHT G S C F  +RLYNF   G  DP+LD  Y A L+ +C    + +   + D  +   FD+ YY  L ENKGL QSD  L ++  A + +  +R     Q  FF  F +++ RM +++ LTG QGEIR  C V+N+   ++
Sbjct:  141 VPNGRRDSLRGFMDLANDNLPGPSSTLKQLKDRFKNVGLDRSSDLVALSGGHTFGKSQCQFIMDRLYNFGETGLPDPTLDKSYLATLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKSKIM 333          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 77/188 (40.96%), Postives = 103/188 (54.79%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-----RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V  GR+DG V+  + A+ L PSPF     +   F   GL V D+V LSG HT G + C  FSNRL+NFTG G  D +L+    + L+T C    +   TA LD  S   FD++Y+  L+E KGL  SD  L ++  A N    L     R+Q  FF +F  SM RMG++  + G  GE+R  C VIN
Sbjct:  143 RVALGRKDGLVANQSSANNL-PSPFEPLDAIIAKFAAVGLNVTDVVALSGAHTFGQAKCDLFSNRLFNFTGAGTPDSTLETTLLSDLQTVCPIGGNGNKTAPLDRNSTDAFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKRLVEAYSRSQYLFFRDFTCSMIRMGSL--VNGASGEVRTNCRVIN 327          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 75/189 (39.68%), Postives = 104/189 (55.03%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-----RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            +V  GR+DG V+    A+ L PSPF     +   F    L + D+V LSG HT G + C  FSNRL+NFTG G+ D +L+    + L+T C    ++  TA LD  +   FD++Y+  L+E KGL  SD  L ++  A N   +L     R+Q  FF +F  +M RMG  N+  G  GE+R  C VINN
Sbjct:  143 RVALGRKDGLVANQNSANNL-PSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGLGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVRTNCRVINN 328          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   22 TGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFF-TEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            TGRRDG VS     D+ LP P  + S     F +KG+   D V L G HT+G  +C  FS+R+ +F G G  DPS+DP     L+  C++ A    TA LD  S  +FD+ ++  + + +G+ Q D  L ++   R IV    N + FF  +F ++M +MGA++VLTG  GEIR+ C   N
Sbjct:  139 TGRRDGRVS--NNLDVTLPGPTISVSGAVSLFTNKGMNTFDAVALLGAHTVGQGNCGLFSDRITSFQGTGRPDPSMDPALVTSLRNTCRNSA----TAALDQSSPLRFDNQFFKQIRKRRGVLQVDQRLASDPQTRGIVARYANNNAFFKRQFVRAMVKMGAVDVLTGRNGEIRRNCRRFN 313          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.415e-28
Identity = 67/180 (37.22%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTE-FAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRDG +S  A     LP P     +L   F   GL+  D++ LSG HTIG +HC  FS R+YNF+     DP+L+ RYA  L+  C    D      +DP S   FD+ Y+  L +  GLF SD  L +++ +R+ V    + +  F + F  ++ ++G + V TG  GEIR+ CS +N
Sbjct:  144 GRRDGRLSTVASVQHSLPQPSFKLDQLNTMFARHGLSQTDMIALSGAHTIGFAHCGKFSKRIYNFSPKRPIDPTLNIRYALQLRQMCPIRVDLRIAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLFSDERSRSTVNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLL-----LPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN--KGARNIVMELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            +V  GRRD     A EA L+     +PSP +    +   FN +GL + DLV L G HTIG S C  F  RLYN TGN D D +L+  YA+ L+  C    +      LD  +  KFD++YY  L+  +GL  SD  L T   +    +     N+  FF +FA+SM +MG ++ LTGT GEIR+ C  +N+
Sbjct:  157 EVYLGRRD-----AREASLIGSMENIPSPESTLQTILTMFNFQGLDLTDLVALLGSHTIGNSRCIGFRQRLYNHTGNNDPDQTLNQDYASMLQQGCPISGNDQNLFNLDYVTPTKFDNYYYKNLVNFRGLLSSDEILFTQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRICRRVNH 342          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFF-TEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            VL GRRD + +  + A+  LP+PF N S L   F++KG T K+LV LSG HTIG + CT F  R+YN       + ++DP YA  L+  C S+   T  +  D  +  KFD+ YY  L   KGL  SD  L       + V    N    F T+F  +M +MG ++ LTGT G+IR  C   N
Sbjct:  141 VLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER34_ARATH6.397e-2938.38Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PERN1_TOBAC1.425e-2840.11Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER70_ARATH2.431e-2837.70Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER38_ARATH2.431e-2838.86Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PERN_ARMRU3.175e-2840.96Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER59_ARATH3.175e-2839.68Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PER57_ARATH3.175e-2838.67Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER16_ARATH5.415e-2837.22Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER36_ARATH7.073e-2839.27Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER1_ARAHY7.073e-2839.34Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
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