CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDP--RYAAF---LKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL----RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +VL GRRD   +  A A+  +P+P ++   L  NF  +GL ++DL+ LSG HTIG + C  F  R+     N +Q   +D   R++ F   L ++CK  +     + LD  +   FD+HY+  L+E +GL  SD  L++      I  ++     NQD FF +F +SM +MG +NVLTG +GEIR+ C  +N
Sbjct:  146 EVLLGRRDSLKASFAGANQFIPAPNSSLDSLIINFKQQGLNIQDLIALSGAHTIGKARCVSFKQRIVQ--PNMEQTFYVDEFRRHSTFRRVLGSQCKDSSRDNELSPLDIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHEGEIFQKVWEYAVNQDLFFIDFVESMLKMGNINVLTGIEGEIRENCRFVN 335          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 67/183 (36.61%), Postives = 100/183 (54.64%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDK-FFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GRRD + +    A+  LP PF   + L  +F  KGL+ +D+V LSG HTIG + C  F +R+Y+   NG     +D  +A+  + +C    +    A LD  +  +FD++Y+  LI+ KGL QSD  L       NIV E  N  + F ++FA +M +MG ++ L+G  G IRK C  +N
Sbjct:  146 VKLGRRDSTTASKTLAETDLPGPFDPLNRLISSFASKGLSTRDMVALSGAHTIGQAQCFLFRDRIYS---NG---TDIDAGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFNGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 69/185 (37.30%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSL-ADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V  GR+DG  S A +    LP    +  ++   F   G T+K+LV LSGGHTIG SHC  FSNR++        DP L+ ++A  LK  CK+   + T  A LDP +  KFD+ Y+  L    GL  SD  L  +   R  V +   NQ  FF +FA++M+++G + V     GE+R++C   N
Sbjct:  143 EVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLKELVALSGGHTIGFSHCKEFSNRIF-----PKVDPELNAKFAGVLKDLCKNFETNKTMAAFLDPVTPGKFDNMYFKNLKRGLGLLASDHILFKDPSTRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFN 322          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 67/181 (37.02%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD + + A+ A+  LP P ++ S+L+  F  K L   D+V LSG HTIG + C+ F  R+Y        D +++  +A  LK  C      T  A LD  +   FD+ YY  L+  KGL  SD  L  N+   N V     N   F + F  +M +MG +  LTGTQG+IR  CS +N+
Sbjct:  138 GRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIYG------GDTNINTAFATSLKANCPQSGGNTNLANLDTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNTVRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVNS 312          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 69/213 (32.39%), Postives = 104/213 (48.83%), Query Frame = 1
Query:   22 TGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCK-SLADTTTTAELD----------------------------------PGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFF-TEFAQSMKRMGAMNVLTGTQGEIRKKCS 552
            TGR+D + +    A+  LP+P A  S + + F+ +G   ++ V L G H+IG++HCTFF NRLYNF+  G  DP L+P +   LKTKC  S++ ++ +A  D                                   G    F + Y+  L++NKGL  SD  L+ ++     V    +    F  EFA SM ++ + NVLTG  G++R  CS
Sbjct:  186 TGRKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNERETVSLFGAHSIGITHCTFFKNRLYNFSATGKPDPELNPGFLQELKTKCPFSVSTSSPSAPPDIGLPPSLPASDSENSYGMSSGNRNDEVIDLSYNNEGGDENFGTRYFRRLMQNKGLMSSDQQLMGSEVTEMWVRAYASDPLLFRREFAMSMMKLSSYNVLTGPLGQVRTSCS 398          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 73/184 (39.67%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCK-SLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQ-GEIRKKCSV 555
            QV  GR DG  S A      +P   +   +L K F  KGLTV++LVVLSG HTIG +HC  F  RLY++ G    DPSLD R    L+  C  S   +     LD  +   FD+ Y+  L  N GL  SD AL  +   + I +E+ R++ KF   F  +M +MG++ V  G + GEIR  C V
Sbjct:  161 QVKKGRWDGKRSTAKNVPPNIPRSNSTVDQLIKLFASKGLTVEELVVLSGSHTIGFAHCKNFLGRLYDYKGTKRPDPSLDQRLLKELRMSCPFSGGSSGVVLPLDATTPFVFDNGYFTGLGTNMGLLGSDQALFLDPRTKPIALEMARDKQKFLKAFGDAMDKMGSIGVKRGKRHGEIRTDCRV 344          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.632e-24
Identity = 69/185 (37.30%), Postives = 107/185 (57.84%), Query Frame = 1
Query:   22 TGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHC-TFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT--TTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTE-FAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            +GR DG+ S A+E+   L  P +N S+L  +F  KG++++DLVVLSG HT+G SHC +F S+RL       D    ++P  AAFL+T+C     T+   T   D  +    D  YY  ++ +  LF SDAALLT+     +V++      ++ + F ++M +M ++ V TG QG++RK C  IN+
Sbjct:  157 SGRLDGTFSNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSFVSDRL-------DVPSDINPALAAFLRTRCPPNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAINH 334          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 67/185 (36.22%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADT--TTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFT-EFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GRRD   +  + A+  +P P ++ S L   F  +GL+ +D+V LSG HTIG + CT F  R+YN T       ++D  +A   +  C S + +     A LD  +   FD++YY  LI  KGL  SD  L       + V    N  K FT +F   M +MG +  LTG++GEIRK C  +N
Sbjct:  144 VKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTRDMVALSGAHTIGQARCTSFRARIYNET-------NIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYNGGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEIRKSCGKVN 321          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER43_ARATH (Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 69/189 (36.51%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIV-MELRNQDKFF-----TEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V TGRRDG VS  + A  + P    +   LK  F  KGL  KDLV+LS  HTIG + C F S RLY+F   G  DP+++P +   L T+C    D      +D  S R FD      + +   + Q+DA L  +   R +V   L   + FF     ++F +++ +MG + V TG +GEIR+ CS  N
Sbjct:  139 EVPTGRRDGRVSNMSLAKDM-PEVSDSIEILKAKFMQKGLNAKDLVLLSAAHTIGTTACFFMSKRLYDFLPGGQPDPTINPTFLPELTTQCPQNGDINVRLPIDRFSERLFDKQILQNIKDGFAVLQTDAGLYEDVTTRQVVDSYLGMLNPFFGPTFESDFVKAIVKMGKIGVKTGFKGEIRRVCSAFN 326          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.075e-23
Identity = 65/184 (35.33%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFF-TEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            VL GRRD + S A +   L P P ++  +L   +N K L   D+V LSG HTIG + C+ F++ +YN       D +++  +AA L+  C   A +T  A LD  +   FD+ YY  L+  KGL  SD  L  +    + V    +    F + FA +M +MG ++  TGTQG+IR+ C  +N+
Sbjct:  146 VLLGRRDSTASFAGQTSDL-PPPTSSLGQLLSAYNKKNLNPTDMVALSGAHTIGQAQCSSFNDHIYN-------DTNINSAFAASLRANCPR-AGSTALAPLDTTTPNAFDNAYYTNLLSQKGLLHSDQELFNSGSTDSTVRSFASSTSAFNSAFATAMVKMGNLSPQTGTQGQIRRSCWKVNS 320          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER20_ARATH3.285e-2536.46Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PERX_NICSY9.559e-2536.61Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER41_ARATH1.630e-2437.30Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER1_WHEAT1.630e-2437.02Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER48_ARATH2.781e-2432.39Putative Peroxidase 48 OS=Arabidopsis thaliana GN=... [more]
PER19_ARATH2.781e-2439.67Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER2_MAIZE3.632e-2437.30Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]
PER4_VITVI1.380e-2336.22Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER43_ARATH1.380e-2336.51Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=... [more]
PER66_MAIZE3.075e-2335.33Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
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