CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1911 contig Csv1_Contig1911:564..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER7_ARATH (Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDK--FFTEFAQSMKRMGAMNVLTGTQ--GEIRKKCSVINN 564
            GRRD   S A + + + PS   + + L + F   GL V DLVVLSG HTIG + C    +RLYN+      DPS+D +YA +L+ +C+  ++   T +LDP +   FD+ YY  L ++ G+  +D  L+ +     +V     Q    F  +FA SM ++  + VLTG    GEIRK CS  N+
Sbjct:  167 GRRDSKHSYARDVEKV-PSGRRDVTALLETFQSYGLNVLDLVVLSGAHTIGKASCGTIQSRLYNYNATSGSDPSIDAKYADYLQRRCRWASE---TVDLDPVTPAVFDNQYYINLQKHMGVLSTDQELVKDPRTAPLVKTFAEQSPQIFRQQFAVSMAKLVNVGVLTGEDRVGEIRKVCSKSNS 346          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 69/185 (37.30%), Postives = 98/185 (52.97%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADL-LLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALL-TNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GRRD + +  A A+   LP       +L   F+ KGL  +DLV LSG HTIG S C  F +RLY      +    +D  +A+  K +C ++      A LD  +   FD++YY  L++ KGL  +D  L  +      IV E  +N+ KF  +FA +M +MG +  LTG+ GEIRK CS +N
Sbjct:  143 VKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGLNTRDLVALSGAHTIGQSQCFLFRDRLY------ENSSDIDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGSGASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER35_ARATH (Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.245e-23
Identity = 62/184 (33.70%), Postives = 90/184 (48.91%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V  GR DG VS A+  +  LP P  N  +L   F    LT +D++ LS  HT+G +HC     R++ F G    DP+L+  YA  L+  C    D      +DP + + FD+ Y+  L + KGLF SD  L T+  +R  V     N   F   F  +M ++G + V   + G IR+ C   N
Sbjct:  146 EVELGRFDGLVSTASSVEGNLPGPSDNVDKLNALFTKNKLTQEDMIALSAAHTLGFAHCGKVFKRIHKFNGINSVDPTLNKAYAIELQKACPKNVDPRIAINMDPVTPKTFDNTYFKNLQQGKGLFTSDQVLFTDGRSRPTVNAWASNSTAFNRAFVIAMTKLGRVGVKNSSNGNIRRDCGAFN 329          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.947e-23
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   97 SELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADT-TTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR-NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            S L  +F ++ L V DLV LSG HT GV+HC  F +R      N    P++D ++A  L+ KC     + T T +LD  +   FD+ YY  LI  +GLF+SD  L+ +   + +      NQ  FF +FA+SM +M  M++LTGT+GEIR  C+V N
Sbjct:    1 STLISSFANRSLDVADLVSLSGAHTFGVAHCPAFEDRSSRVRHN----PAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHPTTKRMATRFSLNQGAFFEQFARSMTKMSNMDILTGTKGEIRNNCAVPN 153          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.400e-22
Identity = 65/185 (35.14%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADT--TTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQ-DKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V  GRRD   +  A A+  +P+P  + S+L  +F+  GL+ +D+V LSG HTIG S C  F  R+YN T       +++  +A   +  C   A +     A LD  S   FD+ Y+  L+  +GL  SD  L       +IV    N    F ++FA +M +MG ++ LTG+ GEIRK C   N
Sbjct:  119 VKVGRRDAKTASQAAANSNIPAPSMSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCVNFRARVYNET-------NINAAFATLRQRSCPRAAGSGDANLAPLDINSATSFDNSYFKNLMAQRGLLHSDQVLFNGGSTDSIVRGYSNSPSSFNSDFAAAMIKMGDISPLTGSSGEIRKVCGKTN 296          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 64/185 (34.59%), Postives = 97/185 (52.43%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKS-LADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            V  GR+DG  S A +    +P       ++   F   G +++++V LSG HTIG SHC  FS+RLY        D  ++PR+AA LK  CK+   D T  A  D  +  KFD+ Y+  L    GL  SD  L+ +   +  V +   N+  FF +FA++M+++G + V     GE+R++C   NN
Sbjct:  151 VKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLREMVALSGAHTIGFSHCKEFSDRLY----GSRADKEINPRFAAALKDLCKNHTVDDTIAAFNDVMTPGKFDNMYFKNLKRGLGLLASDHILIKDNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRRCDHFNN 331          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.892e-22
Identity = 65/186 (34.95%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADT--TTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFT-EFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +VL GRRD + +  A A+  LP+P  + + L   F  K L+  DLV LSG HTIG++ C  F   +YN       D +++  +A   +  C + A       A LD  +   FD+ YY  L+  +GL  SD  L        +V    +  + F+ +FA +M RMG ++ LTGTQG+IR+ CS +N
Sbjct:  143 RVLLGRRDSTTASLALANSDLPAPSLDLANLTAAFAKKRLSRTDLVALSGAHTIGLAQCKNFRAHIYN-------DTNVNAAFATLRRANCPAAAGNGDGNLAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFNGGATDGLVRTYASTPRRFSRDFAAAMIRMGNISPLTGTQGQIRRACSRVN 321          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER67_ARATH (Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 62/182 (34.07%), Postives = 98/182 (53.85%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADL-LLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADT--TTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKC 549
            V  GRRD + +  A A+  ++P P    S L   F  +GL+ +D+V LSG HTIG + C  F NR+YN +       ++D  +A   +  C + + +     A LD  S  +FD  +Y  L+  KGL  SD  L  N    ++V+    N + F+ +FA++M +MG ++ LTG+ G+IR+ C
Sbjct:  138 VKLGRRDSTTANFAAANSGVIPPPITTLSNLINRFKAQGLSTRDMVALSGAHTIGRAQCVTFRNRIYNAS-------NIDTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGFYKQLLSKKGLLTSDQVLFNNGPTDSLVIAYSHNLNAFYRDFARAMIKMGDISPLTGSNGQIRQNC 312          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER2_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKC 549
            V  GRRD + S AA+A   LP      S+L  NF +KGL  +++V LSG HT+G + C  F  R+YN T        ++P +   L   C    +  T   LD  +   FD++YY  L+ ++GL  SD  L       +IV E + N   F  +FA +M +M  + V+TGT G +R  C
Sbjct:  145 VRLGRRDSTTSNAAQAATDLPRGNMVLSQLISNFANKGLNTREMVALSGSHTLGQARCIRFRGRIYNST------LRIEPNFNRSLSQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTDSIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKC 549
            V  GRRD + S AA+A   LP      S+L  NF +KGL  +++V LSG HT+G + C  F  R+YN T        ++P +   L   C    +  T   LD  +   FD++YY  L+ ++GL  SD  L       +IV E + N   F  +FA +M +M  + V+TGT G +R  C
Sbjct:  145 VRLGRRDSTTSNAAQAATDLPRGNMVLSQLISNFANKGLNTREMVALSGSHTLGQARCIRFRGRIYNST------LRIEPNFNRSLSQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTDSIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER7_ARATH4.016e-2336.96Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 ... [more]
PER5_ARATH4.016e-2337.30Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PER35_ARATH5.245e-2333.70Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=... [more]
PER2_HORVU8.947e-2340.13Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PERP7_BRARA3.400e-2235.14Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER65_ARATH5.799e-2234.59Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PER70_MAIZE9.892e-2234.95Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER67_ARATH1.292e-2134.07Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=... [more]
PER2_ZINEL1.292e-2135.20Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV... [more]
PER1_ZINEL1.292e-2135.20Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
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