CF838549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.173e-24 Identity = 61/183 (33.33%), Postives = 98/183 (53.55%), Query Frame = 3 Query: 264 LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGS-----MDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 LR K + L +L++C + + K +H +L+ + F AS L+A C + + YA IF QI P F FN LIR F + +A Y +M + + PD+ TFP L KA ++++ + G Q H + + GF+ D++V+NSL++MY C + A IF QM + V SW +++ Sbjct: 9 LRFKHPK-LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24 Identity = 61/178 (34.27%), Postives = 100/178 (56.18%), Query Frame = 3 Query: 279 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNP---FCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDV-KFEEALFLYNEMFERGVE-PDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 Q ++ +TC ++ + K++HA L+ + P F ++ S + ++YA +F I+ +F +N+LIR DV + EEA LY +M ERG PD TFP + KACA + EG Q+H + K GF D++V N LI++YG C ++ A +F +M ++S+ SW ++I Sbjct: 49 QRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 224 HSP 2 Score: 91.6633 bits (226), Expect = 5.184e-18 Identity = 55/174 (31.61%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 294 ILKTCKNL---EEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFK---LGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 +LK C + E K+VH ++K GF + + + L+ G +D A +F ++ E +NS+I V+ +++ AL L+ EM +R EPD +T ++ ACA L +L G H + + + D+ V+NSLI MY KC + A +F+ M ++ +ASW A+I Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHL--YGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMI 327
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.706e-24 Identity = 56/179 (31.28%), Postives = 100/179 (55.87%), Query Frame = 3 Query: 264 LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVE-PDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 +R E + L+ K+ E+KK++A ++ G + F + +V C MDYA +F Q+ P F +NS+IR + + + + + +Y ++ + E PD FTFP +FK+CA L + G Q+HGH+ K G + + +N+LI+MY K + + A +F +M ++ V SW +++ Sbjct: 6 IREVENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIE--DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLL 182 HSP 2 Score: 70.0922 bits (170), Expect = 1.615e-11 Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 3 Query: 420 GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 G M A +F + + + ++I G+ + EA+ + EM G+EPD + ++ +CA+L +L+ G IH + + GF V N+LI MY KC + A +F QM+ K V SW +I Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMI 314
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23 Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 3 Query: 282 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGS-MDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 E ++ L+ C EE K++HA +LK G + + + ++ C S + YA +F D P F +N +IRGF + E +L LY M + +TFP+L KAC+ L A +E QIH + KLG+E D++ NSLIN Y + A +F ++ + SW ++I Sbjct: 16 ETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188 HSP 2 Score: 99.7525 bits (247), Expect = 1.904e-20 Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 291 TILKTCKNL---EEFKKVHAHVLKWGFFWNPFCASNLVATCA------LSH-------------W----------GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 ++LK C NL EE ++HA + K G+ + + ++L+ + A L+H W G MD A ++FR++ E A + ++I G+V+ +EAL L++EM VEPD+ + ACA+L AL++G IH ++ K D + LI+MY KC ++E A +FK + +KSV +W A+I Sbjct: 120 SLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALI 320
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22 Identity = 54/164 (32.93%), Postives = 90/164 (54.88%), Query Frame = 3 Query: 306 CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 CK++ E K+H ++ G S ++ ALS G +DYA ++ +P + +N +IRGF E+++ +Y +M G+ PDH T+P L K+ ++L K G +H V K G E+DLF+ N+LI+MYG A +F +M K++ +W +I+ Sbjct: 18 CKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSIL 181
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22 Identity = 57/177 (32.20%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 273 KEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQID-EPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGV-EPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 K + + +L+ C ++++ +K+H+HV+ G +P ++L+ CA+S GS+ +A +F D +P D+N LIRGF ++ YN M V PD FTF K+C +++++ + ++IHG V + GF D V SL+ Y VE AS +F +M + + SW +I Sbjct: 4 KARVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMI 180 HSP 2 Score: 86.6557 bits (213), Expect = 1.668e-16 Identity = 59/210 (28.10%), Postives = 99/210 (47.14%), Query Frame = 3 Query: 168 GVDSSSMTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 G +SS S+L + +L P N LK E + + C ++H V++ GF + A++LV + + GS++ A +F ++ +N +I F +AL +Y M GV D +T AL +CA + AL G+ +H + E +FV N+LI+MY KC +E A +F M ++ V +W ++I Sbjct: 80 GFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL------EIHGSVIRSGFLDDAIVATSLVRCYSAN--GSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMI 281
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22 Identity = 55/176 (31.25%), Postives = 90/176 (51.14%), Query Frame = 3 Query: 273 KEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYN-EMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 + E L+TC N + K++H ++K + L++ S +G YA +F Q+ P F +N +IR + K EAL L+ M + D FTFP + KAC +++ G Q+HG K GF D+F QN+L+++Y KC K + +F +M +S+ SW ++ Sbjct: 19 RSPEASYFLRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVS--SSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTML 192 HSP 2 Score: 76.2554 bits (186), Expect = 2.254e-13 Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 3 Query: 426 MDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 +D A +F Q+ + ++I +VK+ + +EA L+ M V+P+ FT L +A +L +L G +H + K GF D F+ +LI+MY KC ++ A +F M KS+A+W ++I Sbjct: 201 LDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMI 324
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22 Identity = 61/174 (35.06%), Postives = 97/174 (55.75%), Query Frame = 3 Query: 279 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHW-GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 Q + ++ C +L E ++ A+ +K F A L+ C S SM YA +F + EP FNS+ RG+ + E L+ E+ E G+ PD++TFP+L KACA +AL+EG Q+H KLG + +++V +LINMY +CE V+ A +F ++ + V + A+I Sbjct: 30 QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMI 202 HSP 2 Score: 80.4925 bits (197), Expect = 1.195e-14 Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 3 Query: 291 TILKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 ++LK C K LEE +++H +K G N + L+ + +D A +F +I EP +N++I G+ + + EAL L+ EM + ++P+ T ++ +CA L +L G IH + K F + V +LI+M+ KC ++ A +IF++M K +W A+I Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINM--YTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMI 303
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.531e-22 Identity = 49/170 (28.82%), Postives = 94/170 (55.29%), Query Frame = 3 Query: 291 TILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGV-EPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797 T+ K CK+ ++HA +++ G + S +++ + S S+ Y+ S+F ++ PG + +N LI+G+ F E + + M G+ PD +TFP + K C+ ++ G +HG V ++GF+ D+ V S ++ YGKC+ + A +F +M +++ SW A++ Sbjct: 15 TLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSS-SSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALV 183
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22 Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 300 KTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAI 794 + CKN+ K++HA ++ G N L+ + +LS G++ YA +F +I +P N ++RG + +K E+ + LY EM +RGV PD +TF + KAC+KL+ G HG V + GF + +V+N+LI + C + AS +F + +W ++ Sbjct: 20 QNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSM 184 The following BLAST results are available for this feature:
BLAST of CF838549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 184
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838549 ID=CF838549; Name=CF838549; organism=Citrus sinensis; type=EST; length=797bpback to top |