CF838549

Overview
NameCF838549
Unique NameCF838549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 39/127 (30.71%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  426 MDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERG-VEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQ--MDQKSVASWRAII 797
            M+ AC +F ++ E     + ++I G+V++ + EEAL ++++M   G V+P+  T+ ++  AC+ L  L EG QIH  + K   + +  V ++L+NMY K  ++  A  +F    + Q+ + SW ++I
Sbjct:  280 MNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMI 406          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 39/129 (30.23%), Postives = 64/129 (49.61%), Query Frame = 3
Query:  402 CALSHWGSMDYACSIFRQID----EPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV 776
            CA+   G+MD A S+ +++D     P    +N L+RG   + KFEEA  L  EM  RG++PDH ++  L    +K    K    +   +  LGF   L   N+L+    K ++ E A  + ++M  + +
Sbjct:  478 CAI---GNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGI 603          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 34/126 (26.98%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  420 GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            G +  A  +F  +++     +  +I+ + +     EAL L+ +M ++GV P   +  ++   CA L +L+ G Q+H H+ +  F+ D++V + L+ MY KC ++  A  +F +   K +  W +II
Sbjct:  279 GEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 38/144 (26.39%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  369 NPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKF-EEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            N  C +++++     + G ++ A  IF          +N+++ GF +  +  + ++ +Y  M   G  P+  TF ++  AC+ L + + G Q+H  + K G    + + +SL++MY KC  +  A  +F QM +K+V SW ++I
Sbjct:  205 NVVCCTSMIS--GYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346          
The following BLAST results are available for this feature:
BLAST of CF838549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
PP185_ARATH2.755e-1130.71Pentatricopeptide repeat-containing protein At2g35... [more]
PP152_ARATH2.755e-1130.23Pentatricopeptide repeat-containing protein At2g15... [more]
PPR84_ARATH6.138e-1126.98Pentatricopeptide repeat-containing protein At1g56... [more]
PPR62_ARATH8.016e-1126.39Pentatricopeptide repeat-containing protein At1g28... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838549 ID=CF838549; Name=CF838549; organism=Citrus sinensis; type=EST; length=797bp
CTGACATACTTTCTTCTGGCTGAAATTCTTTCTCAATTCTCATGGATGAC
ATTCCATTCTTTCTCAAAGTCATGTACTTTTCATGCTCCTTCAGTTCTTC
CCATTTCACTAAAACTTGCAGTTGATTGATGCTTTGCCGAGAACAACAAT
CTTGATTGATAAATAATGGTGTGGATAGCAGCAGCATGACTAGGACGTCT
GTCCTTCACCAGTCCCTTCTCTTGACACAACCTGAAGAACCACCAAAAGG
CCCTGAGCTCAATCTGAGGTTGAAGGAACAAGAATGTTTAACAATATTGA
AGACATGCAAGAACCTGGAAGAATTCAAGAAAGTTCATGCCCATGTCCTG
AAATGGGGTTTCTTTTGGAACCCTTTTTGTGCAAGCAATCTTGTGGCAAC
TTGTGCTCTCTCACACTGGGGCAGCATGGACTACGCCTGCTCAATTTTTC
GACAAATCGATGAACCAGGTGCTTTTGATTTCAATTCTTTGATTAGAGGA
TTTGTTAAGGATGTAAAGTTTGAGGAAGCTTTGTTTCTTTATAATGAGAT
GTTTGAGAGAGGAGTGGAACCTGATCATTTCACATTTCCAGCCCTTTTCA
AGGCATGTGCTAAGTTACAAGCATTGAAAGAGGGAATGCAAATTCATGGG
CATGTATTTAAGCTGGGATTTGAATATGATTTGTTTGTACAGAATTCTTT
AATCAATATGTATGGCAAGTGTGAGAAGGTAGAGTTTGCTTCTGCTATTT
TTAAGCAAATGGATCAAAAGAGTGTTGCTTCTTGGAGGGCTATCATT
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