CF838549

Overview
NameCF838549
Unique NameCF838549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 51/162 (31.48%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  312 NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +L +  + HA +LK G   + + ++ L+A+   S++   + A  + + I +P  + F+SLI    K   F +++ +++ MF  G+ PD    P LFK CA+L A K G QIH      G + D FVQ S+ +MY +C ++  A  +F +M  K V +  A++
Sbjct:   30 SLSKTTQAHARILKSGAQNDGYISAKLIAS--YSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALL 189          

HSP 2 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  408 LSHWGSMDYACSIFR----QIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            LS  G +D A  +F     Q  E     + S+I G  ++ K  EAL L+ EM   GV+P+H T P++  AC  + AL  G   HG   ++    ++ V ++LI+MY KC ++  +  +F  M  K++  W +++
Sbjct:  328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 47/155 (30.32%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  336 HAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLG-FEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            HAH++K+G   +PF  ++L++  + S  G  D+A  +F   ++     + ++I GFV++    EA+  + EM + GV  +  T  ++ KA  K++ ++ G  +HG   + G  + D+F+ +SL++MYGKC   + A  +F +M  ++V +W A+I
Sbjct:  126 HAHIVKFGLDSDPFVRNSLISGYSSS--GLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALI 278          

HSP 2 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 47/178 (26.40%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  276 EQECLTILKTCKNLEEFK---KVHAHVLKWGFF-WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            E   +++LK    +E+ +    VH   L+ G    + F  S+LV           D A  +F ++       + +LI G+V+   F++ + ++ EM +  V P+  T  ++  ACA + AL  G ++H ++ K   E +     +LI++Y KC  +E A  +F+++ +K+V +W A+I
Sbjct:  204 EMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM--YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMI 379          

HSP 3 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 53/176 (30.11%), Postives = 76/176 (43.18%), Query Frame = 3
Query:  282 ECLTILKTCKNLEEFKKVHAHVLKWGFFWN--PFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEAL--FLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            E  T+L    +    K++H  +L    F+       S L+  C  +      YA  +  Q+       ++SLI  F   +     L    Y  M   GV P   TFP L KA  KL+      Q H H+ K G + D FV+NSLI+ Y      +FAS +F   + K V +W A+I
Sbjct:    3 ELKTLLDLPLHFLHLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT-QFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMI 176          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 55/179 (30.73%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  288 LTILKTC---KNLEEFKKVHAHVLKWGFFWNPFCA----SNLVATCALSHWGSMDYACSIFRQIDEP--GAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L++L+TC   +NL   + +H H+LK     +        + L A+C       ++ A  +F +I  P      ++ +IR +  +   E+AL LY +M   GV P  +T+P + KACA L+A+ +G  IH HV    F  D++V  +L++ Y KC ++E A  +F +M ++ + +W A+I
Sbjct:    3 LSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASC-----NEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMI 176          

HSP 2 Score: 88.5817 bits (218), Expect = 4.388e-17
Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  333 VHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFD---FNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            VH + +K GF  +    + +++  A   +GS+   C  FRQ  E G  D   +NSLI G V + + EE+  L++EM   G+ PD  T   +  AC+ L AL  G   HG+    G+  +  + N+L++MY KC K++ A  +F  M ++ + SW  ++
Sbjct:  330 VHCYAVKAGFILDLTVQNTIISFYA--KYGSL---CDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTML 482          

HSP 3 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 45/172 (26.16%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  294 ILKTCKNL---EEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFE-RGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +LK C  L   ++ K +H+HV    F  + +  + LV   A    G ++ A  +F ++ +     +N++I GF       + + L+ +M    G+ P+  T   +F A  +  AL+EG  +HG+  ++GF  DL V+  ++++Y K + + +A  +F    +K+  +W A+I
Sbjct:  109 VLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKC--GELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMI 278          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  420 GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            G +D A  +F ++ E     + ++I GFVK    EEAL  + EM   GV+PD+    A   AC  L AL  G+ +H +V    F+ ++ V NSLI++Y +C  VEFA  +F  M++++V SW ++I
Sbjct:  154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVI 279          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 53/175 (30.29%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  279 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVE--PDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            Q  L      +++ + K +H HV+  G   +    S L  T AL   G + YA  +F ++ +     +N +IR +V++  + +A+ ++  M   GV+  PD +T+P + KA  +L+++K G+ +HG + +  F  D +VQN+L+ MY    KVE A  +F  M  + V SW  +I
Sbjct:   19 QSLLNHFAATQSISKTKALHCHVITGGRV-SGHILSTLSVTYALC--GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190          

HSP 2 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 39/155 (25.16%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  333 VHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            VH  +L+  F  + +  + L+A     ++G ++ A  +F  +       +N++I G+ ++    +AL +++ M    V+ DH T  ++   C  L+ L+ G  +H  V +      + V+N+L+NMY KC +++ A  +F +M+++ V +W  +I
Sbjct:  139 VHGRILRSWFGRDKYVQNALLAM--YMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMI 291          

HSP 3 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 36/126 (28.57%), Postives = 59/126 (46.83%), Query Frame = 3
Query:  420 GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            G MD A  +F +++      +  +I G+ +D   E AL L   M   GV P+  T  +L   C     + +G  +HG   +     D+ ++ SLI+MY KC++V+    +F    +     W AII
Sbjct:  267 GRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAII 392          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  291 TILKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +ILKTC    +LE  +++H+ ++K  F  N +  S L+   A    G +D A  I  +        + ++I G+ +    ++AL  + +M +RG+  D         ACA LQALKEG QIH      GF  DL  QN+L+ +Y +C K+E +   F+Q +     +W A++
Sbjct:  495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA--KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664          

HSP 2 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 52/172 (30.23%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  291 TILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++L  CK +E  +   ++H  VLK GF  + +  + LV+     H G++  A  IF  + +  A  +N+LI G  +    E+A+ L+  M   G+EPD  T  +L  AC+    L  G Q+H +  KLGF  +  ++ +L+N+Y KC  +E A   F + + ++V  W  ++
Sbjct:  293 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL--YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462          

HSP 3 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  315 LEEFKKVHAHVLKWGFFWN-PFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L+E +++HA     GF  + PF   N + T   S  G ++ +   F Q +      +N+L+ GF +    EEAL ++  M   G++ ++FTF +  KA ++   +K+G Q+H  + K G++ +  V N+LI+MY KC  +  A   F ++  K+  SW AII
Sbjct:  607 LKEGQQIHAQACVSGFSSDLPF--QNALVTL-YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765          

HSP 4 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 46/172 (26.74%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  294 ILKTCKN----LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +L+ C+      +  +++HA +L  G   +    + L+     S  G +D A  +F  +       + ++I G  K+    EA+ L+ +M+  G+ P  + F ++  AC K+++L+ G Q+HG V KLGF  D +V N+L+++Y     +  A  IF  M Q+   ++  +I
Sbjct:  192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDL--YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 53/188 (28.19%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  255 ELNLRLKEQECLTILKTCKNLEEF------KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERG-VEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            E+ L   + +CLT++     L +       + V    L+ G+F       N V     +  G +D A ++F  +       +N++I G+ ++    EA+ +YN M E G +  +  T+ ++  AC++  AL++GM++HG + K G   D+FV  SL +MYGKC ++E A ++F Q+ + +   W  +I
Sbjct:  338 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM-YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524          

HSP 2 Score: 82.4185 bits (202), Expect = 3.145e-15
Identity = 47/169 (27.81%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  291 TILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++LK C+ + +  K+H   LK+GF W+ + A++L+     S + ++  A  +F ++       +N++I G+ +    +EAL L N +       D  T  +L  AC +      G+ IH +  K G E +LFV N LI++Y +  ++     +F +M  + + SW +II
Sbjct:  158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHL--YSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320          

HSP 3 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 48/170 (28.24%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  291 TILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNE-MFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            T+ + C NL+  K +HA ++      N   ++ LV      + G++  A   F  I     + +N +I G+ +     E +  ++  M   G+ PD+ TFP++ KAC   + + +G +IH    K GF +D++V  SLI++Y + + V  A  +F +M  + + SW A+I
Sbjct:   59 TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYC--YLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 223          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 53/161 (32.92%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  315 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L   K++H + LK  F +N   A+  VA+ A    GS+ YA  +F  I       +N+LI G  +      +L  + +M   G+ PD FT  +L  AC+KL++L+ G ++HG + +   E DLFV  S++++Y  C ++    A+F  M+ KS+ SW  +I
Sbjct:  411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKC--GSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVI 569          

HSP 2 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  420 GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFER-GVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            GS D +  +F  +     F +N++I  + ++  ++E L  + EM     + PDHFT+P + KACA +  +  G+ +HG V K G   D+FV N+L++ YG    V  A  +F  M ++++ SW ++I
Sbjct:  134 GSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMI 260          

HSP 3 Score: 74.3294 bits (181), Expect = 8.565e-13
Identity = 50/175 (28.57%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  294 ILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVE----PDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++K C  + +      VH  V+K G   + F  + LV+       G +  A  +F  + E     +NS+IR F  +   EE+  L  EM E   +    PD  T   +   CA+ + +  G  +HG   KL  + +L + N+L++MY KC  +  A  IFK  + K+V SW  ++
Sbjct:  193 VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTH--GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365          

HSP 4 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 43/172 (25.00%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  291 TILKTCKNLEEF---KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++L  C  L+     K+VH  +++     + F   ++++     H G +    ++F  +++     +N++I G++++   + AL ++ +M   G++    +   +F AC+ L +L+ G + H +  K   E D F+  SLI+MY K   +  +S +F  + +KS ASW A+I
Sbjct:  501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYI--HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 52/162 (32.10%), Postives = 89/162 (54.94%), Query Frame = 3
Query:  315 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEF-ASAIFKQMDQKSVASWRAII 797
            LE  K +H++++  G   N    ++LV     S +  M+ A  +     E   F + S++ GFV++++ +EA+  + EM   G++P++FT+ A+   C+ +++L  G QIH    K+GFE    V N+L++MY KC   E  AS +F  M   +V SW  +I
Sbjct:  240 LEFGKTIHSNIIVRGIPLNVVLKTSLVDF--YSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLI 399          

HSP 2 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 3
Query:  276 EQECLTILKTCKNLEEFKKVHAH--VLKWGFFWNPFCASNLVATCALSH--WGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++ C+ IL  C++      +H H  V+K+G   N    +NL++    +   W     A  +F ++     F +  +I  F K  +F  AL L+ EM   G  P+ FTF ++ ++CA L+ +  G ++HG V K GFE +  V +SL ++Y KC + + A  +F  +      SW  +I
Sbjct:   24 QKSCIRILSFCESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWN----ARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMI 197          

HSP 3 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  294 ILKTCKNLEEFKKV---HAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +L+ C  L   ++V   HA++L+          ++LV   A S    +DYA ++ R +       + SL+  F +  K E AL + N M+  G+  D  + P    A A L AL+ G  +H +  K GF     V NSL++MY KC  +E A  +F+++    V SW  ++
Sbjct:  433 VLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSR--KVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLV 601          

HSP 4 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  291 TILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +++++C  L +     +VH  V+K GF  N    S+L  +   S  G    AC +F  +       +  +I   V   K+ EAL  Y+EM + GV P+ FTF  L  A + L  L+ G  IH ++   G   ++ ++ SL++ Y +  K+E A  +     ++ V  W +++
Sbjct:  129 SVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSL--SDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFL-GLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVV 297          

HSP 5 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 39/170 (22.94%), Postives = 86/170 (50.59%), Query Frame = 3
Query:  288 LTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L++    ++L+  K++H+  +K GF  +     N +    +    S   A  +F  +  P    + +LI G V     ++   L  EM +R VEP+  T   + +AC+KL+ ++  ++IH ++ +   + ++ V NSL++ Y    KV++A  + + M ++   ++ +++
Sbjct:  332 LSLCSAVRSLDFGKQIHSQTIKVGFE-DSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLV 500          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/170 (31.18%), Postives = 86/170 (50.59%), Query Frame = 3
Query:  288 LTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L+ +    NL+    VHA  +K G   N +  S+LV+    S    M+ A  +F  ++E     +N++IRG+  + +  + + L+ +M   G   D FTF +L   CA    L+ G Q H  + K     +LFV N+L++MY KC  +E A  IF++M  +   +W  II
Sbjct:  334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM--YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501          

HSP 2 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  291 TILKTCKNLEEFK---KVHAHVLKWGFFWN-PFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFD-FNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS-VASWRAII 797
            TI++ C   E      + H  + K GF     +   +L+     S    M  AC++F ++  P +   +  ++ G  ++  +EEAL  Y EM   GV PD  TF  + + C+ L +L+EG  IH  +F L  + D    N+LI+MY KC  ++ +S +F +M ++S V SW ++I
Sbjct:  634 TIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSR--GMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLI 806          

HSP 3 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  291 TILKTCK---NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++L TC    +LE   + H+ ++K     N F  + LV   A    G+++ A  IF ++ +     +N++I  +V+D    EA  L+  M   G+  D     +  KAC  +  L +G Q+H    K G + DL   +SLI+MY KC  ++ A  +F  + + SV S  A+I
Sbjct:  433 SLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKC--GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602          

HSP 4 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 55/177 (31.07%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  285 CL-TILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYD-LFVQNSLINMYGKCEKVEFASAIFKQMDQ-KSVASWRAII 797
            CL + LK C +   L + K+VH   +K G   +    S+L+     S  G +  A  +F  + E      N+LI G+ ++   EEA+ L+ EM  RGV P   TF  + +AC K ++L  G Q HG + K GF  +  ++  SL+ MY     +  A A+F ++   KS+  W  ++
Sbjct:  531 CLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDM--YSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMM 704          
The following BLAST results are available for this feature:
BLAST of CF838549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
PPR53_ARATH1.782e-1831.48Pentatricopeptide repeat-containing protein At1g20... [more]
PPR75_ARATH2.327e-1830.32Pentatricopeptide repeat-containing protein At1g50... [more]
PP237_ARATH2.327e-1830.73Pentatricopeptide repeat-containing protein At3g16... [more]
PPR13_ARATH3.039e-1837.30Pentatricopeptide repeat-containing protein At1g05... [more]
PP405_ARATH3.039e-1830.29Pentatricopeptide repeat-containing protein At5g39... [more]
PP307_ARATH3.969e-1831.40Pentatricopeptide repeat-containing protein At4g13... [more]
PP348_ARATH5.184e-1828.19Pentatricopeptide repeat-containing protein At4g33... [more]
PPR48_ARATH6.770e-1832.92Pentatricopeptide repeat-containing protein At1g18... [more]
PP430_ARATH1.155e-1732.10Pentatricopeptide repeat-containing protein At5g52... [more]
PP220_ARATH1.155e-1731.18Pentatricopeptide repeat-containing protein At3g09... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838549 ID=CF838549; Name=CF838549; organism=Citrus sinensis; type=EST; length=797bp
CTGACATACTTTCTTCTGGCTGAAATTCTTTCTCAATTCTCATGGATGAC
ATTCCATTCTTTCTCAAAGTCATGTACTTTTCATGCTCCTTCAGTTCTTC
CCATTTCACTAAAACTTGCAGTTGATTGATGCTTTGCCGAGAACAACAAT
CTTGATTGATAAATAATGGTGTGGATAGCAGCAGCATGACTAGGACGTCT
GTCCTTCACCAGTCCCTTCTCTTGACACAACCTGAAGAACCACCAAAAGG
CCCTGAGCTCAATCTGAGGTTGAAGGAACAAGAATGTTTAACAATATTGA
AGACATGCAAGAACCTGGAAGAATTCAAGAAAGTTCATGCCCATGTCCTG
AAATGGGGTTTCTTTTGGAACCCTTTTTGTGCAAGCAATCTTGTGGCAAC
TTGTGCTCTCTCACACTGGGGCAGCATGGACTACGCCTGCTCAATTTTTC
GACAAATCGATGAACCAGGTGCTTTTGATTTCAATTCTTTGATTAGAGGA
TTTGTTAAGGATGTAAAGTTTGAGGAAGCTTTGTTTCTTTATAATGAGAT
GTTTGAGAGAGGAGTGGAACCTGATCATTTCACATTTCCAGCCCTTTTCA
AGGCATGTGCTAAGTTACAAGCATTGAAAGAGGGAATGCAAATTCATGGG
CATGTATTTAAGCTGGGATTTGAATATGATTTGTTTGTACAGAATTCTTT
AATCAATATGTATGGCAAGTGTGAGAAGGTAGAGTTTGCTTCTGCTATTT
TTAAGCAAATGGATCAAAAGAGTGTTGCTTCTTGGAGGGCTATCATT
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