CF838549

Overview
NameCF838549
Unique NameCF838549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.508e-17
Identity = 71/261 (27.20%), Postives = 120/261 (45.98%), Query Frame = 3
Query:   39 LMDDIPFFLKVMYFSCSFSSSHFTKTCS*LMLCREQQS*-----LINNGVDSSSMTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEE---FKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L+DD+   L  MY  CS   S     C  +    E  S      LI   + + ++   ++   S ++TQ    P     +         +  K C NL +    K+V     K G   N   A+++++    S    M+ A   F  + E     +N+ + G  +++ FE+A  L +E+ ER +    FTF +L    A + ++++G QIH  V KLG   +  V N+LI+MY KC  ++ AS +F  M+ ++V SW ++I
Sbjct:  300 LVDDVECSLVDMYAKCSADGS--VDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS---------SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD--RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547          

HSP 2 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  285 CLT-ILKTCKNLEEF---KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCE---KVEFASAIFKQMDQKSVASWRAII 797
            C T +++ C N +     +     ++K G F +  C    +    +    S + A  +F ++ E     +  +I   ++     EA+  + +M   G E D FT  ++F ACA+L+ L  G Q+H    + G   D  V+ SL++MY KC     V+    +F +M+  SV SW A+I
Sbjct:  168 CYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALI 343          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 45/124 (36.29%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  426 MDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            M+ A  +F ++++  AF +N +I+GF     + EA+  Y+ M   GV+ D FT+P + K+ A + +L+EG +IH  V KLGF  D++V NSLI++Y K      A  +F++M ++ + SW ++I
Sbjct:   80 MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMI 203          

HSP 2 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  312 NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEY-DLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +LEE KK+HA V+K GF  + +  ++L++       G    A  +F ++ E     +NS+I G++       +L L+ EM + G +PD F+  +   AC+ + + K G +IH H  +   E  D+ V  S+++MY K  +V +A  IF  M Q+++ +W  +I
Sbjct:  145 SLEEGKKIHAMVIKLGFVSDVYVCNSLISL--YMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305          

HSP 3 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  321 EFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            E + +H + ++ GF   P               G +  A  IF ++ E     +NS+I  +V++ K   AL L+ E+++  + PD  T  ++  A A+  +L EG +IH ++ K  +  +  + NSL++MY  C  +E A   F  +  K V SW +II
Sbjct:  348 EGRTIHGYAMRRGFL--PHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSII 504          

HSP 4 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 42/130 (32.31%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  411 SHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFER-GVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            S +G + YA  IF  + +     +N +I  + ++ +  +A   + +M E+ G++PD  T   L  A A L    EG  IHG+  + GF   + ++ +LI+MYG+C +++ A  IF +M +K+V SW +II
Sbjct:  278 SKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSII 403          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 49/170 (28.82%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  297 LKTCKNLEEFKKVHAHVLKW--GFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPG-AFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L  CK+L   K++HAH+L+       N F  +  V++ +++    + YA ++F  I  P  +  FN  +R   +  +    +  Y  +   G   D F+F  + KA +K+ AL EGM++HG  FK+    D FV+   ++MY  C ++ +A  +F +M  + V +W  +I
Sbjct:   19 LSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSIN----LSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMI 184          

HSP 2 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 44/149 (29.53%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  363 FWNPFCASNLVATCAL----SHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            F+      NL  + A+    S  G +D A  IF Q ++     + ++I  +V+    +EAL ++ EM   G++PD  +  ++  ACA L  L +   +H  +   G E +L + N+LINMY KC  ++    +F++M +++V SW ++I
Sbjct:  269 FFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMI 417          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  327 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            K++HA VLK     +     N +     +  G M  A  I RQ++      +NSLI+G+V+++ ++EAL  +++M   G + D  +  ++  A  +L  L  GM++H +V K G++ +L V N+LI+MY KC    +    F +M  K + SW  +I
Sbjct:  304 KEIHASVLKSSTHSSELYVCNALIAM-YTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVI 459          

HSP 2 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 53/173 (30.64%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  294 ILKTC---KNLEEFKKVHAHVLK-WGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA-SWRAII 797
            +L+ C   + + + +++H+ + K +  F   F A  LV        GS+D A  +F ++ +  AF +N++I  +V + +   AL LY  M   GV     +FPAL KACAKL+ ++ G ++H  + KLG+    F+ N+L++MY K + +  A  +F    +K  A  W +I+
Sbjct:   86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFM--YGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 256          

HSP 3 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  294 ILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPG-AFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLG-FEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +LK C  L + +   ++H+ ++K G+    F  + LV+  A +    +  A  +F    E G A  +NS++  +    K  E L L+ EM   G  P+ +T  +   AC      K G +IH  V K      +L+V N+LI MY +C K+  A  I +QM+   V +W ++I
Sbjct:  188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND--DLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358          

HSP 4 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 43/166 (25.90%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  312 NLEEFKKVHAHVLKWGFFWNPFCASNL-VATCALSHWGSMDYACSI---FRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            NL    ++HA+V+K G  W+    SNL V    +  +   +  C +   F ++ +     + ++I G+ ++    EAL L+ ++ ++ +E D     ++ +A + L+++    +IH H+ + G   D  +QN L+++YGKC  + +A+ +F+ +  K V SW ++I
Sbjct:  401 NLLAGMELHAYVIKHG--WD----SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 49/165 (29.70%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  312 NLEEFKKV---HAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +L  F+K+   H + +K G   + + ++ ++ +     +G + YA  +F ++ +  +  +N++I G+    K E+A  L+  M   G + D ++F  L K  A ++    G Q+HG V K G+E +++V +SL++MY KCE+VE A   FK++ + +  SW A+I
Sbjct:   12 SLNSFQKLSLTHCYAIKCGSISDIYVSNRILDSYI--KFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALI 174          

HSP 2 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  327 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-SVASWRAII 797
            K +H  V+K G        + L++       G+M+ A S+F  +       +NS+I GF +    E+A+  ++ +    ++ D + F AL ++C+ L  L+ G QIH    K GF  + FV +SLI MY KC  +E A   F+Q+  K S  +W A+I
Sbjct:  325 KSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMI 482          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  330 KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +VHA  +K GF  NPF   + V   +      +D AC +F +I E  +  FN+LI G+ KD  + E++ L+ +M + G +P  FTF  + KA   L     G Q+H      GF  D  V N +++ Y K ++V     +F +M +    S+  +I
Sbjct:  168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVI 323          

HSP 2 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  444 IFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +F ++ E     +N +I  + +  ++E +L  + EM   G +  +F F  +    A L +L+ G Q+H        +  L V NSL++MY KCE  E A  IFK + Q++  SW A+I
Sbjct:  307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 50/154 (32.47%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  336 HAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            H   LK GF  + +  S+LV     S  G ++ A  +F ++ E     + ++I GF ++ + +  L LY++M +   +P+ +TF AL  AC    AL +G  +H     +G +  L + NSLI+MY KC  ++ A  IF Q   K V SW ++I
Sbjct:  143 HCLALKGGFISDVYLGSSLVVLYRDS--GEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMI 294          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  444 IFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEY------DLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +F ++ E     +N+LI G+ ++ + EEAL L+  +    V P H++F  + KACA L  L  GMQ H HV K GF++      D+FV NSLI+MY KC  VE    +F++M ++   SW A+I
Sbjct:  342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465          

HSP 2 Score: 88.5817 bits (218), Expect = 4.388e-17
Identity = 47/165 (28.48%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  306 CKNLEEFKKVHAHVLKWGFF-WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            C +LE+ ++V   + +   + WN            L+  G +D A S+FR + E     +NS++ GF +  + EEAL  +  M + G   + ++F ++  AC+ L  + +G+Q+H  + K  F  D+++ ++L++MY KC  V  A  +F +M  ++V SW ++I
Sbjct:   68 CGSLEDGRQVFDKMPQRNIYTWNS-------VVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLI 225          

HSP 3 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 55/180 (30.56%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  270 LKEQECLTILKTCKNLEEFKK---VHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLG-FEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L E    ++L  C  L +  K   VH+ + K  F  + +  S LV     S  G+++ A  +F ++ +     +NSLI  F ++    EAL ++  M E  VEPD  T  ++  ACA L A+K G ++HG V K      D+ + N+ ++MY KC +++ A  IF  M  ++V +  ++I
Sbjct:  150 LNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM--YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMI 327          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.573e-17
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  333 VHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            VH +V+K G     F AS+L         G +D A  +F +I +  A  +N+L+ G+V++ K EEA+ L+++M ++GVEP   T      A A +  ++EG Q H      G E D  +  SL+N Y K   +E+A  +F +M +K V +W  II
Sbjct:  195 VHGYVVKSGLEDCVFVASSLADM--YGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLII 347          

HSP 2 Score: 87.0409 bits (214), Expect = 1.277e-16
Identity = 57/184 (30.98%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  261 NLRLKEQECLTILKTC---KNLEEFKKVHAHVLKWGFFW--NPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            NLR+  +    IL+ C   ++L   K++HA +LK G F+  N +  + LV   A     +++ A  +F ++     F + ++I    +    E AL  + EM E  + PD+F  P + KAC  L+  + G  +HG+V K G E  +FV +SL +MYGKC  ++ AS +F ++  ++  +W A++
Sbjct:   65 NLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCD--ALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALM 246          

HSP 3 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 43/180 (23.89%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  267 RLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHW---GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            R+    CL+       +EE K+ HA  +      N     N++ T  L+ +   G ++YA  +F ++ E     +N +I G+V+    E+A+++   M    ++ D  T   L  A A+ + LK G ++  +  +  FE D+ + +++++MY KC  +  A  +F    +K +  W  ++
Sbjct:  274 RVTVSTCLSASANMGGVEEGKQSHAIAIV-----NGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 448          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.573e-17
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  306 CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQI--DEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            CK + + K +H  +L +G        S+L++T      G + +A S+ R+    + G + +NSLIR +  +    + L+L+  M      PD++TFP +FKAC ++ +++ G   H      GF  ++FV N+L+ MY +C  +  A  +F +M    V SW +II
Sbjct:   38 CKTISQVKLIHQKLLSFGILTLNL-TSHLISTYISV--GCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSII 200          

HSP 2 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 51/172 (29.65%), Postives = 79/172 (45.93%), Query Frame = 3
Query:  294 ILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMF-ERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            + K C  +   +     HA  L  GF  N F  + LVA    S   S+  A  +F ++       +NS+I  + K  K + AL +++ M  E G  PD+ T   +   CA L     G Q+H          ++FV N L++MY KC  ++ A+ +F  M  K V SW A++
Sbjct:  133 VFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAM--YSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302          
The following BLAST results are available for this feature:
BLAST of CF838549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
PP272_ARATH1.508e-1727.20Pentatricopeptide repeat-containing protein At3g49... [more]
PP350_ARATH1.970e-1736.29Pentatricopeptide repeat-containing protein At4g35... [more]
PP311_ARATH1.970e-1728.82Pentatricopeptide repeat-containing protein At4g14... [more]
PP296_ARATH1.970e-1731.21Pentatricopeptide repeat-containing protein At3g63... [more]
PP255_ARATH1.970e-1729.70Putative pentatricopeptide repeat-containing prote... [more]
PP206_ARATH1.970e-1731.41Putative pentatricopeptide repeat-containing prote... [more]
PP192_ARATH1.970e-1732.47Pentatricopeptide repeat-containing protein At2g37... [more]
PP151_ARATH1.970e-1739.52Pentatricopeptide repeat-containing protein At2g13... [more]
PP431_ARATH2.573e-1734.19Pentatricopeptide repeat-containing protein At5g55... [more]
PP390_ARATH2.573e-1730.12Pentatricopeptide repeat-containing protein At5g16... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838549 ID=CF838549; Name=CF838549; organism=Citrus sinensis; type=EST; length=797bp
CTGACATACTTTCTTCTGGCTGAAATTCTTTCTCAATTCTCATGGATGAC
ATTCCATTCTTTCTCAAAGTCATGTACTTTTCATGCTCCTTCAGTTCTTC
CCATTTCACTAAAACTTGCAGTTGATTGATGCTTTGCCGAGAACAACAAT
CTTGATTGATAAATAATGGTGTGGATAGCAGCAGCATGACTAGGACGTCT
GTCCTTCACCAGTCCCTTCTCTTGACACAACCTGAAGAACCACCAAAAGG
CCCTGAGCTCAATCTGAGGTTGAAGGAACAAGAATGTTTAACAATATTGA
AGACATGCAAGAACCTGGAAGAATTCAAGAAAGTTCATGCCCATGTCCTG
AAATGGGGTTTCTTTTGGAACCCTTTTTGTGCAAGCAATCTTGTGGCAAC
TTGTGCTCTCTCACACTGGGGCAGCATGGACTACGCCTGCTCAATTTTTC
GACAAATCGATGAACCAGGTGCTTTTGATTTCAATTCTTTGATTAGAGGA
TTTGTTAAGGATGTAAAGTTTGAGGAAGCTTTGTTTCTTTATAATGAGAT
GTTTGAGAGAGGAGTGGAACCTGATCATTTCACATTTCCAGCCCTTTTCA
AGGCATGTGCTAAGTTACAAGCATTGAAAGAGGGAATGCAAATTCATGGG
CATGTATTTAAGCTGGGATTTGAATATGATTTGTTTGTACAGAATTCTTT
AATCAATATGTATGGCAAGTGTGAGAAGGTAGAGTTTGCTTCTGCTATTT
TTAAGCAAATGGATCAAAAGAGTGTTGCTTCTTGGAGGGCTATCATT
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