CF838549

Overview
NameCF838549
Unique NameCF838549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 47/174 (27.01%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  273 KEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAI 794
            K Q+  T++     +   K++H  ++      + F  + L+       +    Y+  +F     P  F +NSLI GFV +  F E L L+  + + G+    FTFP + KAC +  + K G+ +H  V K GF +D+    SL+++Y    ++  A  +F ++  +SV +W A+
Sbjct:   12 KVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLF--FRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183          

HSP 2 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 46/171 (26.90%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  294 ILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +LK C      K    +H+ V+K GF  +    ++L++  + S  G ++ A  +F +I +     + +L  G+    +  EA+ L+ +M E GV+PD +    +  AC  +  L  G  I  ++ ++  + + FV+ +L+N+Y KC K+E A ++F  M +K + +W  +I
Sbjct:  117 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGS--GRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 52/158 (32.91%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  327 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGF-EYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            K++H  V+K G F +       V    +      D A  +F +I +P    ++ L+ G+V+     E L ++ EM  RG+EPD F+      ACA++ AL +G  IH  V K  + E D+FV  +L++MY KC  +E A  +F+++ +++V SW A+I
Sbjct:  136 KQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFD-ARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALI 292          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 53/182 (29.12%), Postives = 98/182 (53.85%), Query Frame = 3
Query:  264 LRLKEQECLTILKTCKNLEEFK---KVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPG-AFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +RL E    +++K C NL+E +   ++H  V+K+GF ++    + L+   A S   +M  A  +F++I   G    + ++I GF+++   EEA+ L++EM  +GV P+ FT+  +  A   +       ++H  V K  +E    V  +L++ Y K  KVE A+ +F  +D K + +W A++
Sbjct:  291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV--AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466          

HSP 2 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 45/160 (28.12%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  330 KVHAHVLKWGFFWNPFCASNLVATCALSHW---GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQA-LKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +VHA V+K  +       S+ V T  L  +   G ++ A  +F  ID+     +++++ G+ +  + E A+ ++ E+ + G++P+ FTF ++   CA   A + +G Q HG   K   +  L V ++L+ MY K   +E A  +FK+  +K + SW ++I
Sbjct:  414 EVHAQVVKTNYE-----RSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568          

HSP 3 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  327 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +++H   +K+GF  +    ++LV T       +      +F ++ E     + +LI G+ ++   +E L L+  M   G +P+ FTF A     A+      G+Q+H  V K G +  + V NSLIN+Y KC  V  A  +F + + KSV +W ++I
Sbjct:  113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKG--SNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  348 LKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L+  F WN   +       A S  G MD  C  F Q+ +  +  + ++I G+    ++ +A+ +  +M + G+EP  FT   +  + A  + ++ G ++H  + KLG   ++ V NSL+NMY KC     A  +F +M  + ++SW A+I
Sbjct:   77 LRTAFSWNTVLS-------AYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219          

HSP 2 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 56/184 (30.43%), Postives = 85/184 (46.20%), Query Frame = 3
Query:  315 LEEFKKVHAHVLKWGFFWNPFCAS---NLVATCA----------------LSHW----------GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGV-EPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV 776
            +E  KKVH+ ++K G   N   ++   N+ A C                 +S W          G MD A + F Q+ E     +NS+I GF +      AL ++++M    +  PD FT  ++  ACA L+ L  G QIH H+   GF+    V N+LI+MY +C  VE A  + +Q   K +
Sbjct:  162 METGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345          

HSP 3 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 51/204 (25.00%), Postives = 89/204 (43.63%), Query Frame = 3
Query:  291 TILKTCKNLEEF---KKVHAHVLKWGFFWNPFCASNLVA----------------------------TCALSHW---GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMD-QKSVASWRAII 797
            ++L  C NLE+    K++H+H++  GF  +    + L++                            T  L  +   G M+ A +IF  + +     + ++I G+ +   + EA+ L+  M   G  P+ +T  A+    + L +L  G QIHG   K G  Y + V N+LI MY K   +  AS  F  +  ++   SW ++I
Sbjct:  284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP202_ARATH (Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  294 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSM-DYA---------CSI-FRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +L +CK  ++  ++H  ++K G   N    + +V   A S    + D+A         CS  F ++++P  F +N++I+         +AL L   M E GV  D F+   + KAC++L  +K GMQIHG + K G   DLF+QN LI +Y KC  +  +  +F +M ++   S+ ++I
Sbjct:   18 VLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMI 194          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP253_ARATH (Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 49/176 (27.84%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  285 CLTILKTCKNLEEFKK----VHAHVLKWGFFWNPFCAS-NLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            C   +K  +++ + K+    +HA V+  G   N    S +L+A+C     G + YA  +F ++ + G   +NS+I  + +    +E L LY++M    ++PD  TF    KAC     L++G  +       G++ D+FV +S++N+Y KC K++ A  +F +M ++ V  W  ++
Sbjct:   16 CPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCG--RIGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMV 189          

HSP 2 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 48/173 (27.75%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  297 LKTCKN---LEEFKKVHAHVLKWGFFWNPFCAS---NLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +K C +   LE+ + V    + +G+  + F  S   NL   C     G MD A  +F ++ +     + +++ GF +  K  +A+  Y EM   G   D      L +A   L   K G  +HG++++ G   ++ V+ SL++MY K   +E AS +F +M  K+  SW ++I
Sbjct:  123 IKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKC-----GKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLI 290          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 55/173 (31.79%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  297 LKTCKNLEEF---KKVHAHVLKWGFFWNPFCASNLVATCALSHW---GSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            LK C  L++    KK+H  ++K   F       N+V T  L  +   G +  A  +F  I       + S+I G+VK+   EE L L+N M E  V  + +T+  L  AC KL AL +G   HG + K G E    +  SL++MY KC  +  A  +F +     +  W A+I
Sbjct:  149 LKACTELQDLDNGKKIHCQLVKVPSF------DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315          

HSP 2 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 3
Query:  285 CLTI---LKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGF--EYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            C+TI   L  C   +NLE  + VH   +K G  W+   A+ LV   A  +      A  +F    E     +NS+I GF ++    EALFL++ M    V P+  T  +LF ACA L +L  G  +H +  KLGF     + V  +L++ Y KC   + A  IF  +++K+  +W A+I
Sbjct:  343 CVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRD--AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMI 518          

HSP 3 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 45/171 (26.32%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  285 CLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            C  +L  C N++  ++ H  +   G   +   A+ LV+      +G    A  +F QI EP  + +  ++R +  + +  E + LY+ + + G   D   F    KAC +LQ L  G +IH  + K+   +D  V   L++MY KC +++ A  +F  +  ++V  W ++I
Sbjct:   47 CFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGF--FGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMI 214          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  291 TILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            T+LK+  N   L+  +++HAHV++ G   N    + +V       W  +  A  +F Q+          L+ G+ +  +  +AL L+ ++   GVE D F F  + KACA L+ L  G QIH  V KLG E ++ V   L++ Y KC   E A   F+++ + +  SW AII
Sbjct:  189 TLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW--LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAII 358          

HSP 2 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 51/175 (29.14%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  294 ILKTCKNLEEF---KKVHAHVLKWGFFWNPFCASNLV---ATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEP-DHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            +LK C +LEE    K++HA V K G        + LV     C+     S + AC  F++I EP    ++++I G+ +  +FEEA+  +  +  +     + FT+ ++F+AC+ L     G Q+H    K       + +++LI MY KC  ++ A+ +F+ MD   + +W A I
Sbjct:  291 VLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCS-----SFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFI 460          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 47/163 (28.83%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  315 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYAC-SIFRQI-DEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            L +  ++H++++KWGF  +    ++L+         S  Y C ++F    +   +  +N+++   ++  +  E L L+  M     EPDH T   L + C ++ +LK G Q+H +  K G   + F++N LI+MY KC  +  A  IF  MD + V SW  +I
Sbjct:  387 LSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFC---SDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLI 546          

HSP 2 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/182 (26.37%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  261 NLRLKEQECLTILKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            + +++ +  ++++  C   ++L + +K+H H+L     ++    +++++       GS+  A  +F  + E     + S+I G+ ++ +  EA+ LY +M +  + PD F F ++ KACA    +  G Q+H  V KL     L  QN+LI MY +  ++  AS +F  +  K + SW +II
Sbjct:   62 SFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSM--YGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSII 241          

HSP 3 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  381 ASNLVATCAL----SHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQM-DQKSVASWRAII 797
            A N +A C+L    +  G ++ A  +F QI+ P    +N +I G   +   +EA+ ++++M   G  PD  +  +L  A  K  AL +GMQIH ++ K GF  DL V NSL+ MY  C  +     +F+   +     SW  I+
Sbjct:  302 AGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTIL 445          
BLAST of CF838549 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 48/179 (26.82%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  267 RLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNP--FCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            ++K    L +L++C +            ++G F  P  F  + L++  A    G +  A  +F  + E   F ++++I  + ++ ++ E   L+  M + GV PD F FP + + CA    ++ G  IH  V KLG    L V NS++ +Y KC +++FA+  F++M ++ V +W +++
Sbjct:   78 KVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAKC--GCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVL 254          

HSP 2 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  420 GSMDYACSIFRQIDEPG----AFDFNSLIRGFVKDVKFEEALFLYNEMFERGVEPDHFTFPALFKACAKLQALKEGMQIHGHVFKLGFEYDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWRAII 797
            G  D A  + ++++  G     F + ++I G + +    +AL ++ +MF  GV P+  T  +   AC+ L+ + +G ++H    K+GF  D+ V NSL++MY KC K+E A  +F  +  K V +W ++I
Sbjct:  296 GKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMI 425          
The following BLAST results are available for this feature:
BLAST of CF838549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
PP219_ARATH2.178e-1627.01Putative pentatricopeptide repeat-containing prote... [more]
PP260_ARATH2.845e-1632.91Pentatricopeptide repeat-containing protein At3g28... [more]
PP172_ARATH2.845e-1629.12Pentatricopeptide repeat-containing protein At2g27... [more]
PP168_ARATH2.845e-1628.67Pentatricopeptide repeat-containing protein At2g22... [more]
PP202_ARATH3.715e-1630.73Pentatricopeptide repeat-containing protein At2g45... [more]
PP253_ARATH4.852e-1627.84Putative pentatricopeptide repeat-containing prote... [more]
PP146_ARATH4.852e-1631.79Pentatricopeptide repeat-containing protein At2g03... [more]
PP378_ARATH6.337e-1631.98Pentatricopeptide repeat-containing protein At5g13... [more]
PP280_ARATH6.337e-1628.83Pentatricopeptide repeat-containing protein At3g53... [more]
PPR52_ARATH1.081e-1526.82Pentatricopeptide repeat-containing protein At1g19... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838549 ID=CF838549; Name=CF838549; organism=Citrus sinensis; type=EST; length=797bp
CTGACATACTTTCTTCTGGCTGAAATTCTTTCTCAATTCTCATGGATGAC
ATTCCATTCTTTCTCAAAGTCATGTACTTTTCATGCTCCTTCAGTTCTTC
CCATTTCACTAAAACTTGCAGTTGATTGATGCTTTGCCGAGAACAACAAT
CTTGATTGATAAATAATGGTGTGGATAGCAGCAGCATGACTAGGACGTCT
GTCCTTCACCAGTCCCTTCTCTTGACACAACCTGAAGAACCACCAAAAGG
CCCTGAGCTCAATCTGAGGTTGAAGGAACAAGAATGTTTAACAATATTGA
AGACATGCAAGAACCTGGAAGAATTCAAGAAAGTTCATGCCCATGTCCTG
AAATGGGGTTTCTTTTGGAACCCTTTTTGTGCAAGCAATCTTGTGGCAAC
TTGTGCTCTCTCACACTGGGGCAGCATGGACTACGCCTGCTCAATTTTTC
GACAAATCGATGAACCAGGTGCTTTTGATTTCAATTCTTTGATTAGAGGA
TTTGTTAAGGATGTAAAGTTTGAGGAAGCTTTGTTTCTTTATAATGAGAT
GTTTGAGAGAGGAGTGGAACCTGATCATTTCACATTTCCAGCCCTTTTCA
AGGCATGTGCTAAGTTACAAGCATTGAAAGAGGGAATGCAAATTCATGGG
CATGTATTTAAGCTGGGATTTGAATATGATTTGTTTGTACAGAATTCTTT
AATCAATATGTATGGCAAGTGTGAGAAGGTAGAGTTTGCTTCTGCTATTT
TTAAGCAAATGGATCAAAAGAGTGTTGCTTCTTGGAGGGCTATCATT
back to top