CF838550

Overview
NameCF838550
Unique NameCF838550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838550_ssr206 microsatellite CF838550_ssr206:206..217. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11109 contig Csv1_Contig11109:105..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_MONFR (Alternative oxidase, mitochondrial OS=Monilinia fructicola GN=AOX1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.482e-31
Identity = 73/164 (44.51%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 800
            H  P  F D+VA   V+ LR  TD                              +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  + R ++L  QGVFFN+FF+ YL SPK  HR VGYLEEEA+ +YT
Sbjct:   94 HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGLFMRTMILGAQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYT 257          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_NEUCR (Alternative oxidase, mitochondrial OS=Neurospora crassa GN=aod-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.351e-31
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  387 KHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 800
            +H  P T  D +A++ V++ R  TD+                          + ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT
Sbjct:  100 EHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYT 261          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_GELSS (Alternative oxidase, mitochondrial OS=Gelasinospora sp. (strain S23) GN=aod-1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.595e-30
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  387 KHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 800
            +H  P T  D +A++ V++ R  TD+                          + ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT
Sbjct:  100 EHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQVDKNHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYT 261          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_BOTFU (Alternative oxidase, mitochondrial OS=Botryotinia fuckeliana GN=aox PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.595e-30
Identity = 72/164 (43.90%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 800
            H  P  F D+VA   V+ LR  TD                              +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  + R ++L  QGVFFN+FF+ YL SP+  HR VGYLEEEA+ +YT
Sbjct:   97 HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGIFMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYT 260          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_TRYBB (Alternative oxidase, mitochondrial OS=Trypanosoma brucei brucei GN=AOX PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.303e-29
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 800
            H  P   +D +AYR+V+  R   D F   R+G         R + LETVA VPGMVGGML HL SLR      GWI  LL EAENERMHLMT +EL +P    R+ ++  Q + +    V Y++SP+  HR VGYLEEEA+ +YT
Sbjct:   77 HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGGMLRHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMYLFLLVAYVISPRFVHRFVGYLEEEAVITYT 221          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX2_CANAL (Alternative oxidase 2, mitochondrial OS=Candida albicans GN=AOX2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.701e-29
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            H    T  DK+++R+++ +R   DL                       + ++  R + LE+VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W+ R ++   QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L
Sbjct:  107 HRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPDEFKGTRWEMTEGKWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLL 267          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_PICST (Alternative oxidase, mitochondrial OS=Pichia stipitis GN=STO1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  387 KHHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYGC-------RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            +H  P TF DK+A+R ++L+R   D                 F   RY         R + LE++A VPG V   + HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W+ R ++   QGVF N FF+ YL +PK  HR VGYLEEEA+ +YT ++
Sbjct:   97 EHRPPRTFGDKMAFRGIELVRGSFDFVTGYKKPKTQADIDSGFKGTRYEMTEGKWLTRCIFLESIAGVPGAVASFIRHLHSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPSWFTRTIIYVGQGVFCNLFFLFYLANPKYCHRFVGYLEEEAVSTYTHFV 260          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_HANAN (Alternative oxidase, mitochondrial OS=Hansenula anomala GN=AOX1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.677e-28
Identity = 64/163 (39.26%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            H  P T  DK+A R VK  R   D                          + ++  R + LE+VA VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T +++  P W+ R ++   QGVF N FF++YL+ P+  HR VGYLEEEA+ +YT  +
Sbjct:   81 HREPKTIGDKIADRGVKFCRASFDFVTGYKKPKDVNGMLKSWEGTRYEMTEEKWLTRCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKIGNPSWFTRFIIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEEEAVSTYTHLI 243          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX_YARLI (Alternative oxidase, mitochondrial OS=Yarrowia lipolytica GN=AOX PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.264e-27
Identity = 69/158 (43.67%), Postives = 92/158 (58.23%), Query Frame = 3
Query:  390 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            H    TF D+VA R + L+RI  DL                     R++  R + LE++A VPGMV GM+ HL SLR  +    WI++L+EEA NERMHL+T ++L KP    R  +L  Q +F+N FF+ YL+SP   HR VGYLEEEA+ +YT  L
Sbjct:  101 HRKTETFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFYNLFFISYLISPATCHRFVGYLEEEAVITYTRCL 258          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1_CANAL (Alternative oxidase 1, mitochondrial OS=Candida albicans GN=AOX1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.113e-26
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  471 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            + ++  R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T +++ KP W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  +
Sbjct:  169 EEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLI 281          
The following BLAST results are available for this feature:
BLAST of CF838550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AOX_MONFR5.482e-3144.51Alternative oxidase, mitochondrial OS=Monilinia fr... [more]
AOX_NEUCR9.351e-3142.59Alternative oxidase, mitochondrial OS=Neurospora c... [more]
AOX_GELSS1.595e-3042.59Alternative oxidase, mitochondrial OS=Gelasinospor... [more]
AOX_BOTFU1.595e-3043.90Alternative oxidase, mitochondrial OS=Botryotinia ... [more]
AOX_TRYBB2.303e-2947.59Alternative oxidase, mitochondrial OS=Trypanosoma ... [more]
AOX2_CANAL6.701e-2940.37Alternative oxidase 2, mitochondrial OS=Candida al... [more]
AOX_PICST1.143e-2840.85Alternative oxidase, mitochondrial OS=Pichia stipi... [more]
AOX_HANAN9.677e-2839.26Alternative oxidase, mitochondrial OS=Hansenula an... [more]
AOX_YARLI1.264e-2743.67Alternative oxidase, mitochondrial OS=Yarrowia lip... [more]
AOX1_CANAL3.113e-2646.02Alternative oxidase 1, mitochondrial OS=Candida al... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838550 ID=CF838550; Name=CF838550; organism=Citrus sinensis; type=EST; length=809bp
TGAGCAGCGTTTCTGACTGACCGAAGAAACAAAAAACAAAGAAAATGAAT
CAATTACTAGCGATGTCGGTGATGCGAGGGCTGATTAACGGCGGGAAGCA
CAGTATCGGCTACGCAAGGACGGTGGTGAGATGTCATCCGAACGTTTGGG
ACGGAGATGACATGCCGTTATTGGGGTTGAGAATGATGGTGATGATGAGT
AGTTATTCTTCTTCTTCGGAATCGGTGCCTGAGAAAGTGAAGGAGAAAGG
AGAGAACGGAATTGTACCGTCGAGTTATTGGGGTATTTCGAGGCCAAAGA
TCACTAGAGAGGATGGCAGTCCATGGCCTTGGAATTGTTTCATGCCTTGG
GAAACTTATCGGGCAGATTTATCAATTGATTTGAAGAAGCACCATGTGCC
CACAACCTTCCTTGACAAAGTTGCTTACCGGACGGTCAAACTCCTCCGAA
TTCCCACTGATTTGTTTTTTCAGAGACGATATGGATGTCGTGCAATGATG
CTGGAAACAGTGGCGGCTGTACCTGGAATGGTTGGAGGAATGTTGCTACA
CCTCAAGTCTCTGCGTAAGTTCCAGCATAGTGGTGGTTGGATCAAAGCTC
TGCTTGAAGAAGCAGAGAATGAGAGGATGCATCTGATGACCATGGTGGAG
CTTGTGAAGCCCAAATGGTATGAGAGGATGCTTGTTCTGACTGTGCAGGG
TGTCTTTTTCAATGCATTCTTTGTGCTTTATCTACTCTCACCTAAACTGG
CTCATAGAGTTGTTGGCTACTTGGAGGAGGAGGCTATACACTCTTACACT
GAATATCTC
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