CF838553

Overview
NameCF838553
Unique NameCF838553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe GN=csn5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 72/186 (38.71%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  139 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQTMMLGQEPRQTTSNLGH-----LNKPSIQALIHGLNRH-YYSIAINY 669
            V IS++ALLKML+H   G+P+EVMG + G+ V+  ++ ++D FA+P  GT   V A +    +      + K   R E V+GWYHSHP +GCWLSGVD+ TQ+  +      VAVV+DP +S++   V I AFR     T  +G +    T +  H      N PS +    G +   YYS+ I Y
Sbjct:   35 VKISAVALLKMLRHVSQGMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFR-----TYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITY 214          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  142 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGR------PEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLIN 540
            YISSLAL+KM  H + G  +E+MG+++G+ +  +++ V+D + +P  GT   V A +  + T M++ L +  +       E +VGWYH HP +GCWL G+D++TQ   + L    +A+VVDP++++K GKV I AFR ++
Sbjct:   76 YISSLALMKMCTHAQTGGSIEIMGMLVGK-ISGHSIIVMDTYRLPVEGTETRVNAQNEAY-TYMVEYLTERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFRNVS 213          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  133 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPE--MVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS-VKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGH 597
            ++  +S+LA +K+L+H   G  MEV+G++LG   DE  V VVD + +P  GT   V A    ++  +  +  +T  PE   +VGWYHSHPG+GCWLSG+D  TQ   +      +A+VVDP +S   G + I AFR +               S  GH
Sbjct:   71 QKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIV-VVDSYRLPVEGTETRVNAQMESYEYTVQYL--ETAVPEGLAIVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPETADTRSVSSHSNASRYGH 225          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.280e-18
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  133 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLI 537
            ++  IS LA  KML H   G  +EVMG+++G   ++  V V D +++P  GT   V A    ++  +  +     + + +VGWYHSHPG+GCWLS +DI TQ   +      +A+VVDP +S+ G  + I AFR +
Sbjct:   64 QKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIV-VKDCYSLPVQGTETRVNAHMESYEYMVQYLDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTL 198          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  112 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 549
            S  + S   V IS L+  K+  +   G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  112 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 549
            S  + S   V IS L+  K+  +   G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  112 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 549
            S  + S   V IS L+  K+  +   G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  133 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSV----EAVDHVFQTNMLDMLKQTGRPEM---VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKG-KVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNK 606
            + V +S LA  K+L H   G  +EVMG++LG  +   T  + D F +P  GT   V    E+ +++ Q     + +   R E    ++GWYHSHPG+ CWLS +D+ TQ   +      +A+VVDP +S    KV I +FR    Q          TT     LNK
Sbjct:   72 QNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGN-TFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQDQNDDTNFYELNTTVFDSELNK 236          
The following BLAST results are available for this feature:
BLAST of CF838553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_SCHPO1.057e-2338.71COP9 signalosome complex subunit 5 OS=Schizosaccha... [more]
CSN5_CANAL4.016e-2339.29COP9 signalosome complex subunit 5 OS=Candida albi... [more]
CSN5_ASHGO2.436e-2037.34COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA2.280e-1837.50COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_YEAST4.755e-1633.96COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS74.755e-1633.96COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS14.755e-1633.96COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_CANGA2.360e-1534.34COP9 signalosome complex subunit 5 OS=Candida glab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838553 ID=CF838553; Name=CF838553; organism=Citrus sinensis; type=EST; length=786bp
CGACGAGAAGGTTTTGAGGAATTGAAAAAAAGCTAGAACATGTCAGGTAT
GGAGCGATTGCAAAGAATGTTCGCTGGTGCCGGTGGCGCCTTGGGTCACC
CGCCACCAGACTCCCCGACTCTTGATTCATCGGAGCAGGTCTACATCTCC
TCACTCGCGCTCCTCAAGATGCTCAAACACGGTAGAGCTGGTGTGCCCAT
GGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGAGTACACAGTTC
GGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTGGTGTTAGTGTT
GAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGACATGCTCAAGCA
GACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTCACATCCTGGAT
TTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGCAGAGTTTTGAA
GCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGT
GAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCA
TGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATCTTGGTCATCTT
AATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAATAGACATTATTA
TTCTATTGCCATCAATTACAGGAAGAATGAACTTGAAGAAAAGATGCTAC
TAAATCTGCACAAGAAGAAATGGACTGATGGATTAACACTTCATCGCTTT
GATTGTCATTCCAAAACCAATGAACAGACTGTCCAG
back to top