CF838554

Overview
NameCF838554
Unique NameCF838554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838554 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.574e-26
Identity = 73/188 (38.83%), Postives = 103/188 (54.79%), Query Frame = 1
Query:   76 PLGFRFRPTDEELINHYLRLK-INGRDSEV-EVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQ-AAFVLCRL-FRKPEEKVDVLKYDEVEQTES--PDTNKSSL 621
            P+GFRFRPTD E+++ YLR K +    S V EVI  +D+C  +PWDLP  S +KT D  W+FF  ++ KY  G R  R T++G+WK TG    I  RK G    IG K+ LVF   +   G +++W MHEY  T        + P+Q   + LC++ F+    +  V     ++ T S  P TN S +
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDI-MRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEYHAT-------FSSPNQIMTYTLCKVKFKGERREFSVATGSGIKHTHSLIPPTNNSGV 180          
BLAST of CF838554 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   67 ESLPLGFRFRPTDEELINHYLRLKINGRDSEVE-VIPEIDVCKLEPWDLPGLSV--IKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYR 465
            E L +GFRF PT+ EL+ +YLR+++ G ++ +  +IP +DV  +EP  LP L+    + +  +W FF PR  +   G R +R T +GYWKATG    + S     N  IG+KKT+VFY G+AP G +T W M+EY+
Sbjct:    3 EELSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPD---NRVIGVKKTMVFYTGKAPTGRKTKWKMNEYK 135          
BLAST of CF838554 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 69/186 (37.10%), Postives = 102/186 (54.84%), Query Frame = 1
Query:   79 LGFRFRPTDEELINHYLRLKINGRDS-EVEV-IPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSR----KAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRKPEEKVDVLKYDEVEQTESPDTNKSS 618
            +GF FRP DEEL+ HYLR KI G  S +VEV I E+++C  +PW+L   S  K+ D  W+FF  R+     G R +R T +G WK TG+   ++ +      G    IG K+ LVF  GR P   +++W++HE+     DLL       Q  +V+CRL  K ++  D+L    ++ T +   N +S
Sbjct:    5 VGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEF---HYDLLPE----HQRTYVICRLEYKGDD-ADILSAYAIDPTPAFVPNMTS 180          
BLAST of CF838554 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   76 PLGFRFRPTDEELINHYLRLKINGRD-SEVE-VIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTI-RSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEY 462
            P+G RF PTDEE++  YL  K + RD S V+  I  + VC+L+PW+LP  S IK +D  W FF P++ KY  G +  R T++G+WK+TG+ + I R+R+      IG KK L+FY     K  +++W++HEY
Sbjct:    4 PVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQ-----IGEKKILMFY---TSKESKSDWVIHEY 127          
BLAST of CF838554 vs. ExPASy Swiss-Prot
Match: NAC8_ARATH (NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 66/237 (27.85%), Postives = 100/237 (42.19%), Query Frame = 1
Query:   73 LPLGFRFRPTDEELINHYL-RLKINGRDSEV---EVIPEID----VCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAG-----YWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRKPEEKVDVLKYDEVEQTESPDTNKSSLDDTSSDLVQETAMSDYVTPNAVLP-----VESCGNSHITSD 729
            LP G +F P+D E+I H L +  ++G  S     E IP ++    +C   P +LPG   +K++     FF    + Y  G R  R           W  TG+ + +           G KK +V Y G+A K   TNW+MH+Y       L       +  +V+ ++F +  +++ V + D+ EQ  S D                T  +D VTP    P     V  C +SHI SD
Sbjct:   58 LPRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPG---VKSDGTVSHFFHKAIKAYSTGTRKRRKIHDDDFGDVRWHKTGRTKPV----VLDGVQRGCKKIMVLYGGKAVK---TNWVMHQYH------LGIEEDEKEGDYVVSKIFYQQPQQLVVKRGDKAEQEVSEDI-----------FAAVTPTADPVTPKLATPEPRNAVRICSDSHIASD 267          
The following BLAST results are available for this feature:
BLAST of CF838554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NAC5_ARATH2.574e-2638.83NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC61_ARATH8.280e-2542.65Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC1_ARATH4.109e-2437.10NAC domain-containing protein 1 OS=Arabidopsis tha... [more]
NAC3_ARATH1.909e-2143.18NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC8_ARATH6.155e-1227.85NAC domain-containing protein 8 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838554 ID=CF838554; Name=CF838554; organism=Citrus sinensis; type=EST; length=849bp
GAAATTGAACACTCTGAATTTCTGTCTGAGATTAATTAGTAGAAGAAGAT
GGCAGTAATATCGATGGAATCTCTGCCGTTGGGTTTCAGATTCAGACCGA
CAGACGAGGAGCTGATCAACCACTACCTTAGATTAAAGATCAACGGCCGT
GATTCGGAGGTCGAGGTTATTCCCGAGATCGATGTTTGCAAACTGGAGCC
GTGGGACTTGCCTGGATTATCGGTGATAAAGACAGAAGATCCAGAGTGGT
TCTTTTTCTGCCCGCGCGATAGAAAATACCCGAACGGGCTTCGTTCGAAT
CGTGCAACAGAAGCTGGATACTGGAAAGCTACGGGCAAGGATCGCACCAT
AAGGAGCCGAAAGGCGGGGACTAATGCATGCATAGGAATGAAAAAGACAT
TGGTGTTTTATAGGGGTCGTGCTCCTAAAGGTGAACGCACCAATTGGATC
ATGCACGAGTACCGCCCCACCCGTGAAGATCTCCTAGATAGCTCTACCAA
GCCTAGTCAGGCTGCATTTGTCCTCTGTCGCTTGTTCAGGAAGCCAGAAG
AGAAGGTCGATGTCCTAAAGTATGACGAAGTGGAACAAACAGAATCTCCT
GATACAAATAAATCATCTCTTGATGACACCTCATCAGATCTTGTTCAAGA
AACCGCAATGTCCGACTATGTCACTCCTAATGCTGTACTACCAGTTGAGA
GCTGCGGCAACAGTCATATAACTTCTGATGTTGAAGATCATTCAACTGAA
GGCACTGTTCTAGAGGAATATCAAGTTCCAGGAGAAATTTTGAATCAATT
TGACATGCCCAGTAATGCTCAAATTGATTGCAAAATATTCTCCCCCGTG
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