CF838555

Overview
NameCF838555
Unique NameCF838555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_SYNPX (30S ribosomal protein S9 OS=Synechococcus sp. (strain WH8102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.040e-31
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  337 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  T YD+ V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYIAAVKAPLETLGLGTEYDILVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 133          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_PROMP (30S ribosomal protein S9 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.040e-31
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  337 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            +GTGRRK ++ARV L  G G+  IN R   +YL  NP  L  +K PL+TLG E SYD+FV   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ERKK GL KARKA Q+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGQIKINGRSGDDYLNFNPSHLNSVKAPLLTLGLENSYDIFVNVFGGGLTGQADAIKQGAARALCGLSPDNRKPLKTEGHLSRDPRSKERKKYGLKKARKAGQFSKR 136          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RR9_GUITH (30S ribosomal protein S9, chloroplastic OS=Guillardia theta GN=rps9 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.040e-31
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTG RK AIARV L  G+G   +N    + Y Q +P +++  K PL TLG E  Y+++V AHGGGL+GQ +AI LG+ARAL K++ ++R+ LK EG LTRDSR+ ERKK GL KARKAPQ+SKR
Sbjct:   11 GTGHRKQAIARVYLTPGSGLIEVNGIKGELYFQYSPNYIRLSKSPLTTLGLENKYNIYVNAHGGGLTGQVEAIRLGLARALCKLNPENRTALKFEGYLTRDSRITERKKYGLKKARKAPQFSKR 134          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_SYNSC (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9605) GN=rpsI PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.317e-31
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  337 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  + YD+ V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPSYIAAVKAPLETLGLSSEYDILVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 133          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RR9_PORYE (30S ribosomal protein S9, chloroplastic OS=Porphyra yezoensis GN=rps9 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.317e-31
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 1
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRKC++A+V L  G+G  IIN    + YLQ +P +L+    PL  LG    YD+ V A GGGL+GQA AI LGVARAL  ++ ++R+ LK EG LTRD RV ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKCSVAQVRLVPGSGNLIINGIPGESYLQFSPNYLRVSYAPLQVLGLLNQYDIHVNARGGGLTGQADAIRLGVARALCSINPENRTTLKSEGYLTRDPRVKERKKYGLKKARKAPQFSKR 137          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RR9_PORPU (30S ribosomal protein S9, chloroplastic OS=Porphyra purpurea GN=rps9 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.026e-31
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 1
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRKC++A+V L  G+G  +IN    + YLQ +P +L+    PL  LG    YD+ V A GGGL+GQA AI LGVARAL  ++ ++RS LK EG LTRD +V ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKCSVAQVRLVPGSGNLVINGIPGESYLQFSPNYLRVSYAPLQVLGLLNQYDIHVNARGGGLTGQADAIRLGVARALCSINPENRSALKSEGYLTRDPKVKERKKYGLKKARKAPQFSKR 137          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RR9_CYAPA (30S ribosomal protein S9, cyanelle OS=Cyanophora paradoxa GN=rps9 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.502e-30
Identity = 72/133 (54.14%), Postives = 92/133 (69.17%), Query Frame = 1
Query:  316 GFAAQTI-FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            G   QT+ +GTGRRK ++A+V L  G G+ +IN + A  YLQ N  +L  +K PL +LG    Y+V V   GGGL+GQ++AI LG+ARAL ++S  HR  LK +  LTRD+R  ERKK GLHKARKAPQYSKR
Sbjct:    2 GQKEQTLAYGTGRRKTSVAKVRLIPGKGEILINSKPANLYLQYNLSYLAAVKSPLESLGLANEYNVIVNTQGGGLTGQSEAIRLGLARALCQISLTHRPLLKSDHHLTRDARAKERKKYGLHKARKAPQYSKR 134          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_KOSOT (30S ribosomal protein S9 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  340 GTGRRKCAIARVVLQEGTGKFIIN---YRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK ++ARV L+ G GKFI+N    +D KEYL  N  W+++   P V       +D+F++  GGGLSGQA AI LG+ARALL+ ++D +  LK+ GLLTRD+R+VERKK GL KAR+APQ+SKR
Sbjct:    9 GTGRRKTSVARVRLRPGEGKFIVNGKELKDLKEYLH-NDAWVRHALKPAVLTDTLGRFDIFIRVSGGGLSGQAGAIRLGIARALLQFNEDLKPLLKQNGLLTRDARIVERKKYGLKKARRAPQFSKR 134          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RR9_OLTVI (30S ribosomal protein S9, chloroplastic OS=Oltmannsiellopsis viridis GN=rps9 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.707e-30
Identity = 69/124 (55.65%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+A+V L  G GK IIN +   +YL  N   +  I+ P      +  +D  VK HGGGLS QA AI LGVARAL +++  HR  LK  G LTRD+R+VERKKAGL KARKAPQ+SKR
Sbjct:    2 GTGRRKRAVAQVKLVAGEGKLIINGKPGFDYLHNNATAILSIQGPFQLFKLQKKFDTIVKVHGGGLSAQADAIKLGVARALCEINTSHRPVLKSNGYLTRDARIVERKKAGLKKARKAPQFSKR 125          
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_MYCHJ (30S ribosomal protein S9 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.169e-29
Identity = 70/125 (56.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  337 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            +GTGRRK ++ARV L+ G G+F IN R AKEYL+ + L    ++ PL      + +++ V AHGGG+SGQA AI LG+ARALLKVS D+R  LK  G+LTRD+R  ERKK GL KAR+A Q+SKR
Sbjct:    9 YGTGRRKSSVARVTLKHGNGQFKINNRVAKEYLKSDILIKDALQ-PLSITNTVSEFNIRVNAHGGGISGQAGAIRLGIARALLKVSADYRPGLKVAGMLTRDARAKERKKFGLRKARRARQFSKR 132          
The following BLAST results are available for this feature:
BLAST of CF838555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SYNPX1.040e-3156.0030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_PROMP1.040e-3158.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GUITH1.040e-3156.4530S ribosomal protein S9, chloroplastic OS=Guillar... [more]
RS9_SYNSC2.317e-3155.2030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RR9_PORYE2.317e-3157.2630S ribosomal protein S9, chloroplastic OS=Porphyr... [more]
RR9_PORPU3.026e-3156.4530S ribosomal protein S9, chloroplastic OS=Porphyr... [more]
RR9_CYAPA1.502e-3054.1430S ribosomal protein S9, cyanelle OS=Cyanophora p... [more]
RS9_KOSOT1.961e-3055.1230S ribosomal protein S9 OS=Kosmotoga olearia (str... [more]
RR9_OLTVI5.707e-3055.6530S ribosomal protein S9, chloroplastic OS=Oltmann... [more]
RS9_MYCHJ2.169e-2956.0030S ribosomal protein S9 OS=Mycoplasma hyopneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838555 ID=CF838555; Name=CF838555; organism=Citrus sinensis; type=EST; length=781bp
CACGAGGGATAAAAGGAGTTGACATACCAAATATGATTATGTAAGGGATA
GGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATAT
CTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTCT
CAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATATC
CATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACAG
AAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAAA
TCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCCG
TCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAAT
TCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACTA
TGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTAG
CTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCTC
AAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGAC
CATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAGT
AGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAAT
ATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTAG
ATCTATTTTCTGCTTGTATCTCTGAACAATT
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