CF838555

Overview
NameCF838555
Unique NameCF838555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_BIFA0 (30S ribosomal protein S9 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.132e-28
Identity = 71/126 (56.35%), Postives = 88/126 (69.84%), Query Frame = 1 
Query:  337 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQD-HRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            +GTGRRK A+ARV L  GTG++ IN R  +EY     L  + +  P+V L  E  +D  V   GGG +GQA AI LGVARAL  + +D +R+ LKK G LTRD+RVVERKKAGLHKAR+APQ+SKR
Sbjct:   39 YGTGRRKEAVARVRLVPGTGEWKINGRTLEEYFPSKLLQRE-VNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALNAIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQFSKR 163
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_MYCLE (30S ribosomal protein S9 OS=Mycobacterium leprae GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:  328 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            ++I   GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    ++D+F   HGGG SGQA A+ LG+ARAL+  S + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   27 RSIQTVGRRKEAVVRVRLVLGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVERTRNFDIFALLHGGGPSGQAGALRLGIARALILASPEDRPALKKAGFLTRDPRSTERKKYGLKKARKAPQYSKR 153
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_MYCLB (30S ribosomal protein S9 OS=Mycobacterium leprae (strain Br4923) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:  328 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            ++I   GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    ++D+F   HGGG SGQA A+ LG+ARAL+  S + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   27 RSIQTVGRRKEAVVRVRLVLGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVERTRNFDIFALLHGGGPSGQAGALRLGIARALILASPEDRPALKKAGFLTRDPRSTERKKYGLKKARKAPQYSKR 153
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRZT (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRZP (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain P1031) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRZJ (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain JJA) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRR6 (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRPS (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRPN (30S ribosomal protein S9 OS=Streptococcus pneumoniae GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838555 vs. ExPASy Swiss-Prot
Match: RS9_STRPJ (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.342e-28
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  340 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 711
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR 130
The following BLAST results are available for this feature:
BLAST of CF838555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BIFA03.132e-2856.3530S ribosomal protein S9 OS=Bifidobacterium animal... [more]
RS9_MYCLE4.090e-2854.6930S ribosomal protein S9 OS=Mycobacterium leprae G... [more]
RS9_MYCLB4.090e-2854.6930S ribosomal protein S9 OS=Mycobacterium leprae (... [more]
RS9_STRZT5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRZP5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRZJ5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRR65.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRPS5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRPN5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRPJ5.342e-2857.2630S ribosomal protein S9 OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838555 ID=CF838555; Name=CF838555; organism=Citrus sinensis; type=EST; length=781bp
CACGAGGGATAAAAGGAGTTGACATACCAAATATGATTATGTAAGGGATA
GGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATAT
CTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTCT
CAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATATC
CATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACAG
AAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAAA
TCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCCG
TCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAAT
TCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACTA
TGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTAG
CTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCTC
AAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGAC
CATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAGT
AGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAAT
ATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTAG
ATCTATTTTCTGCTTGTATCTCTGAACAATT
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