CF838556

Overview
NameCF838556
Unique NameCF838556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.274e-79
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            ++KLF RW  +D+ ++DISL DYI  +  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.290e-79
Identity = 147/196 (75.00%), Postives = 171/196 (87.24%), Query Frame = 2
Query:  104 PSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            P+    +V LF +W+ + V V+DISL DYI  +  K A Y+PH+AGR+ V+RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.770e-78
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 2
Query:  230 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 286.189 bits (731), Expect = 1.520e-76
Identity = 140/198 (70.71%), Postives = 168/198 (84.85%), Query Frame = 2
Query:   98 QDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            ++  Q   ++KLFN+W+FE+V+V D SL DY+     +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct:   31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYV---QVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.061e-74
Identity = 145/206 (70.39%), Postives = 170/206 (82.52%), Query Frame = 2
Query:   86 MAQSQDPSQPHYD----VKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            MA S  P +   D    +KLFN++ FE V+V DISL DYI      +   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    1 MAASIIPKEVSLDETGHIKLFNKFPFEGVEVKDISLVDYI---TIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.204e-73
Identity = 140/189 (74.07%), Postives = 164/189 (86.77%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            +KLFN++ FE V+V DISL DYI      +   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYI---TIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.800e-69
Identity = 128/190 (67.37%), Postives = 158/190 (83.16%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            +V LF +W++  V   DISL DYI     K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK++R
Sbjct:    4 EVALFGKWSYSGVTCPDISLQDYI---CVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.192e-50
Identity = 92/147 (62.59%), Postives = 123/147 (83.67%), Query Frame = 2
Query:  251 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++NA+K  + S+AI KK+++ERVA +NR
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.610e-47
Identity = 96/189 (50.79%), Postives = 131/189 (69.31%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            ++LF +W++  V+V D SL  YI  +      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI++K+EIER+A ++R
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.652e-46
Identity = 94/190 (49.47%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            ++ LF ++++E+V+VN++SL  YI          VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A++NR
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYIN---LSRRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
The following BLAST results are available for this feature:
BLAST of CF838556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS5B_DROME4.274e-7975.2640S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL7.290e-7975.0040S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_NICPL2.770e-7897.4040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_YEAST1.520e-7670.7140S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO7.061e-7470.3940S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.204e-7374.0740S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI1.800e-6967.3740S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.192e-5062.5940S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE9.610e-4750.7930S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU3.652e-4649.4740S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838556 ID=CF838556; Name=CF838556; organism=Citrus sinensis; type=EST; length=823bp
CGAGCGGCAGCCCATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGAGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAAC
CCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGT
GCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGC
CGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCA
AGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGT
GATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAA
CTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTTG
AGTACATGATATTGAGGATGCAT
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