CF838561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29 Identity = 85/192 (44.27%), Postives = 107/192 (55.73%), Query Frame = 2 Query: 86 LSSGANTMNTAPPHAHQALDLSILKRIPAFVYSP-NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVS------VIEPTERDLGVVHQMGCXXXXXXXXXLPQLESVSVEIPRARENFRGLDDMGLSLTNERNGFKSPGNRVLTLKRIWSI 640 + S T++ +P QALD ++L +IP FVYS N P+E +C+VCLSEFE+ + GR+LPKC H FHVDCID WF+S S CPLCRAPVQ P QV E S + PTE GC L + V+I R E F G + GL + NG K PG+RVL+LKR+WSI Sbjct: 65 IRSHLRTLSASP--RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQ-------PPFQVIETGSSSSSSPLTFPTE---------GCEREPI------DLAGIIVDISREVE-FEG-SNPGLPI---ENGSKFPGSRVLSLKRLWSI 227
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24 Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 2 Query: 140 LDLSILKRIPAFVYSPNIEDPKEPLD-CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ--LDITLVHPLVQVEEVVSVIEPTE 427 LD ++L++IP FVYS ++ + PL+ C+VCLSEFE+++ GRVLPKC HVFHVDCID WF+S S+CPLCRAPVQ +T P+ V V IE TE Sbjct: 88 LDPTVLEKIPIFVYS--VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTE 184
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23 Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = 2 Query: 128 AHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ----LDITLVHPLVQV-----EEVVSVIEPTERDLGVVHQMGCXXXXXXXXXLPQLESVSVEIPRARENFRGLDDMGLSLTNERNGFKSPGNRVLTLKRIWS 637 A + LD +++K +P F +S E K+P++CAVCLSEFE++E GRVLP C+H FHVDCIDMWF SHS CPLCR+ V+ ++ T +V + V VIEP+ G+ + + ++E+PR R D++ + F+SP +R+L+ R+ S Sbjct: 91 ASRGLDPNVIKSLPVFTFSD--ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSSS-GLTDEPHGSGSSQMLREDSGRKPAAIEVPR-RTFSEFEDELTRRDSPASQSFRSPMSRMLSFTRMLS 265
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2 Query: 80 FFLSSGANTMNTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 358 F ++ A+T T P L+ SI+K +P F +S ++C+VCLSEF+DNE+GRV+P C+H FHV CIDMWF SHS+CPLCR+ ++ Sbjct: 32 FNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSA--VTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIE 122
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17 Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 122 PHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355 P + LD IL+ I V+ D K+ L+CAVCLS+ D + RVLP+C H FHVDCIDMWFQSHS CPLCR V Sbjct: 90 PLHNAGLDSKILQSIHVVVFK--CTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17 Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 134 QALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349 + LD SI++ P F YS + KE L+C+VCL+EFED+E R++PKC HVFH CID W +SH+ CPLCRA Sbjct: 114 RGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRA 187
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17 Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349 LD S++K I + Y ++ E DC+VCLSEF++NE+ R+LPKC H FHV CID W +SHSNCPLCRA Sbjct: 134 LDESLIKSITVYKYR-KMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 125 HAHQA-LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDIT 370 H H + +D S + +P F Y I P DCAVCL EFE + R+LPKC H FH+DCID W SHS CPLCR+ + D++ Sbjct: 102 HLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLS 184
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17 Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 134 QALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355 + LD S++ IP FVY N E+ E +C +CL +E + GR L C H FHV+CIDMW SHS CPLCR+PV Sbjct: 110 KGLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 125 HAHQA-LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346 H H + LD +++ +P F+Y I+ KEP DCAVCL EF +++ R+LP C H FH+DCID W S+S CPLCR Sbjct: 113 HLHDSGLDQALIDALPVFLYK-EIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186 The following BLAST results are available for this feature:
BLAST of CF838561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838561 ID=CF838561; Name=CF838561; organism=Citrus sinensis; type=EST; length=739bpback to top |