CF838561

Overview
NameCF838561
Unique NameCF838561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838561_ssr464 microsatellite CF838561_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5280 contig Csv1_Contig5280:173..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 2
Query:   89 SSGANTMNTAPPH-AHQALDLSILKRIPAF------VYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLV 388
            SS  N +    PH  ++ LD S ++ IP F      V +   +  K   +C+VCL+EF+++E  R++P C HVFH+DCID+W Q ++NCPLCR  V  + +    L+
Sbjct:   84 SSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLI 190          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVSVIEPTERDLGVVHQMG 457
            L+ S++K I  + Y    +   +  DC+VCLSEFE+NE+ R+LPKC H FH+ CID W +SHSNCPLCRA V     + +P   V + VSV+   + +    HQ G
Sbjct:  117 LNESMIKSITVYKYKSG-DGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV---TGVNNPTASVGQNVSVVVANQSN--SAHQTG 216          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  116 APPHAHQALDLSILKRIPAFVYSPNI-------------EDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            +P    + LD S+++ IP F +                 E+ K   +C+VCLSEF+D E  R++P C H+FH+DCID+W Q+++NCPLCR  V  D
Sbjct:   91 SPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCD 186          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  110 NTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            +TA       LD + ++ +P F +S  ++  K+ LDC+VCLS+FE  E  R+LPKCRH FH+ CID W + H+ CPLCR  V ++
Sbjct:   88 STASSDRFSGLDKTAIESLPLFRFSA-LKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVSVIEPTERDL 436
            +D S++  +P F Y   +     P DC VCL EFE  +  R+LPKC H FHV+CID W  SHS CPLCR+ +    +  H L     +V   E + RD+
Sbjct:  100 VDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSSSYLLVLESEQSSRDM 198          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  128 AHQALDLSILKRIPAFVYSPNIEDP--KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            A + LD+S+++  P F+YS        K  L+CA+CL+EFED+E  R+LPKC HVFH  CID W ++H  CP+CRA
Sbjct:   96 AARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRA 171          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            + LD   ++  P F+YS    +   K  ++CAVCL EFED+E  R++P C HVFH DC+D+W   HS CPLCRA + L+
Sbjct:  105 RGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLN 183          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   95 GANTMNTAPPHAHQALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVSVIE--PTERDL 436
            GA   +     A + L+  +++  P F+YS    ++  K  ++CA+CLSEFED E  R +P C H FH +CID+W  S S CP+CRA + L     +P + ++     ++  P ER L
Sbjct:   80 GAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGESYPYLNMDVETGGVQKLPNERSL 197          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  101 NTMNTAPPHAHQALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            N   T  P     LD S+++  P F YS    +   KE L+C VCL+EFED+E  R++P+C HVFH  CID W +S + CPLCRA
Sbjct:   81 NVRQTTEP----GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRA 161          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            LD   ++ +P F +S  ++  K+ L+C+VCLS+FED E  R+LPKCRH FH+ CID W + H+ CPLCR  V ++
Sbjct:   99 LDKKAIESLPFFRFSA-LKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE 172          
The following BLAST results are available for this feature:
BLAST of CF838561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATL1A_ARATH5.065e-1738.32RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5G_ARATH6.615e-1744.34Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL5K_ARATH8.640e-1739.58RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL4J_ARATH1.474e-1644.71RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL2C_ARATH1.474e-1641.41Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL3B_ARATH1.925e-1650.00RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL2G_ARATH3.283e-1646.84RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4C_ARATH4.288e-1635.59Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL1C_ARATH7.314e-1647.06RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL2D_ARATH9.552e-1648.00Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838561 ID=CF838561; Name=CF838561; organism=Citrus sinensis; type=EST; length=739bp
TGCCAGTTGGCCCCTTTACCGCCACCGCCACCGTTACCGTTACCGTCACC
GTCCCCGTCACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCCAACATGTGGTGGATATTTTG
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