CF838561

Overview
NameCF838561
Unique NameCF838561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838561_ssr464 microsatellite CF838561_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5280 contig Csv1_Contig5280:173..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  116 APPHAHQALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            +P    + LD   +K  P+FVY+    IE     L+C VCL+EF+D+E  R++P C HVFH DC+D+W    S CP+CRA V
Sbjct:   49 SPRRPPRGLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 50/138 (36.23%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  152 ILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLV------------QVEE--VVSVIEPTERDLGVVHQMGCXXXXXXXXXLPQLESVSVEIP 523
            +L+ IP   +  N +D K  L+C VCLSE  D +  RVLP C H FHV+CID W QS+S CP+CR  V L  +   P +            Q  E    S   PT  D  ++   GC          P+L +V ++IP
Sbjct:   68 VLRSIPIVDF--NTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAIIEDGGCGEANEGQ---PELTAVVIDIP 200          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   92 SGANTMNTAPP--HAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            SG+ T +  PP   A++ L   +L+ +P   +SP   + ++  +CA+CL+EF   +  RVLP+C H FHV CID W  SHS+CP CR
Sbjct:   67 SGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCR 153          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  131 HQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ-LDITLV 376
            +  +D S+++ +P F +   +   K+ L+CAVCL+ FE  E  R+LPKC+H FHV+C+D W  +HS CPLCR  V   DI L+
Sbjct:  118 NSGIDRSVIESLPVFRFGA-LSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLI 199          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPK---EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            LD ++++  P F YS ++++ K   + L+CA+CL+E ED+E  R+LP C H+FH+DCID W  SH+ CP+CR+
Sbjct:   95 LDNAVVESFPVFAYS-SVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRS 166          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNI---------EDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            +D  +L+ +P  VYS +          E+  + ++CAVCL+E ED E  R LP+C H FH +C+DMW  SHS CPLCR  V
Sbjct:   99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 179          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 2
Query:  215 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 361
            +C+VCL+EFE++E+ R+LPKC H FH++CID W  SH NCPLCRAPV L
Sbjct:  134 ECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLL 182          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:   86 LSSGANTMNTAP------PHAHQALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEE-VVSVIEPTERD 433
            L  G +T++  P      P  +  L+L I+   P F YS   ++ + K  L+CA+CL EF+ +   R+L  C HVFH +CID+WF+SH  CP+CR  +       +    V+E ++ VI+ T  D
Sbjct:   58 LHHGGDTVSDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPTVDEMIIDVIQETSDD 182          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   86 LSSGANTMNTAPPH---AHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            ++S   +  T PP    A++ L   +L+ +P   YSP+    ++ ++CA+CL+EF   +  RVLP+C H FHV CID W  SHS+CP CR
Sbjct:   57 IASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCR 146          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2
Query:  206 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 361
            E  DC VCL+EFE++E+ R+LPKC H FH+ CID W  SH+NCPLCRA + +
Sbjct:  173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAM 224          
The following BLAST results are available for this feature:
BLAST of CF838561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATL4A_ARATH1.248e-1545.12RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL3E_ARATH1.248e-1536.23Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL1B_ARATH1.248e-1542.53RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL5C_ARATH1.629e-1544.58RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL4O_ARATH1.629e-1546.58RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
EL5_ORYSJ3.630e-1544.44E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL5F_ARATH3.630e-1565.31RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL4I_ARATH3.630e-1535.20Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL1R_ARATH4.741e-1541.11RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL1O_ARATH6.192e-1559.62RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838561 ID=CF838561; Name=CF838561; organism=Citrus sinensis; type=EST; length=739bp
TGCCAGTTGGCCCCTTTACCGCCACCGCCACCGTTACCGTTACCGTCACC
GTCCCCGTCACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCCAACATGTGGTGGATATTTTG
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