CF838561

Overview
NameCF838561
Unique NameCF838561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838561_ssr464 microsatellite CF838561_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5280 contig Csv1_Contig5280:173..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPK-EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDIT 370
            LD +++K+I  F    +    K    DC++CL EF ++E+ R+LPKC H FHV CID W +SHSNCPLCRA + +  T
Sbjct:  154 LDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTT 231          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.056e-14
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  203 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            K+ L+C++CLSE    +  R+LPKC H FHV+CIDMWFQSHS CP+CR  V
Sbjct:  122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            + LD   ++  P FVYS     +  K  L+CA+CL+EFED+E  R+LPKC HVFH  CI  W Q H  CP+CR
Sbjct:   94 RGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCR 166          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            LD + +  +P F+Y       ++P DCAVCL+EF D +  R+LP C H FH+ CID W  S+S CPLCR
Sbjct:  181 LDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  128 AHQALDLSILKRIPAFVYSPNIEDPKEP------LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 361
            A + LD +I+   P F+YS    + KE       ++CAVC+ EFED+E  R++P+C HVFH DC+ +W   HS CPLCR  + L
Sbjct:   64 AVRGLDEAIINSFPTFLYS----EVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCL 143          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 42/138 (30.43%), Postives = 61/138 (44.20%), Query Frame = 2
Query:   80 FFLSSGANTMNTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR----------------------APVQLDITLVHPLVQVEEVVSVIEPTE 427
            F +S    ++++    +++ +    L+  P   YSP +  P    +C +CLS+F   E  R+LPKC H FHV CID W Q H  CP CR                       P ++ I  + PL   E V+  I P E
Sbjct:   89 FMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLE 226          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPL---------DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            LD S++K +P F+YS      K  +         DCAVCL EFE+ +  R LP C H FH++CID W +SH NCPLCR  +
Sbjct:  121 LDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 42/92 (45.65%), Postives = 51/92 (55.43%), Query Frame = 2
Query:   89 SSGANTMNTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            +S AN  N     A   L    LK+IP  +Y   I D K   +C +CL +FED E  RVLPKC H FHV CID W  S S+CP CR  + L+
Sbjct:   73 ASNANA-NLGRLAAATGLKKQALKQIPVGLYGSGIIDMKAT-ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE 162          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  119 PPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            P    + LD   ++ +P + Y+   +   E  DC +CLS+FE+ E  +V+P C HVFHVDC+D W  S+  CPLCR+
Sbjct:  109 PYSFRRGLDSQAVRSLPVYRYTKAAKQRNE--DCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183          
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            + L   ++   P+F+YS    ++  K  ++CA+CL+EFED E  R++P C H FH  CID+W  S S CP+CRA
Sbjct:   98 RGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRA 171          
The following BLAST results are available for this feature:
BLAST of CF838561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATL4H_ARATH8.087e-1547.44Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL1P_ARATH1.056e-1460.78RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL5H_ARATH1.379e-1449.32RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3I_ARATH1.379e-1447.83RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL2F_ARATH1.801e-1444.05RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL1K_ARATH1.801e-1430.43RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL3G_ARATH2.353e-1445.68RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
ATL3C_ARATH3.073e-1445.65RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL2E_ARATH5.242e-1441.56RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL1H_ARATH5.242e-1443.24RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838561 ID=CF838561; Name=CF838561; organism=Citrus sinensis; type=EST; length=739bp
TGCCAGTTGGCCCCTTTACCGCCACCGCCACCGTTACCGTTACCGTCACC
GTCCCCGTCACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCCAACATGTGGTGGATATTTTG
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