CF838561

Overview
NameCF838561
Unique NameCF838561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838561_ssr464 microsatellite CF838561_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5280 contig Csv1_Contig5280:173..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838561 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2 
Query:  128 AHQALDLSILKRIPAFVYSPN--IEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV--QLDITLVHPLVQVEEVVSVIE 418
            A   L   I + +P  +Y  +  ++D +    C+VCL +++  E  + +P C H FH++CID+W  SH+ CPLCR  +  +  + L H   Q  E+VS IE
Sbjct:   83 AELGLSKDIREMLPVVIYKESFIVKDSQ----CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSH---QSTEIVSSIE 176
The following BLAST results are available for this feature:
BLAST of CF838561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATL4E_ARATH9.252e-1134.65RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838561 ID=CF838561; Name=CF838561; organism=Citrus sinensis; type=EST; length=739bp
TGCCAGTTGGCCCCTTTACCGCCACCGCCACCGTTACCGTTACCGTCACC
GTCCCCGTCACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCCAACATGTGGTGGATATTTTG
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