CF838586

Overview
NameCF838586
Unique NameCF838586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = -2 
Query:  296 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 529
            GG SI+G KF+DE    LKH   G+LSMAN G NTN SQFFI+  K  HL+  + VFG V  G + +  +E   +  G
Sbjct: 2963 GGQSIYGDKFDDE-NFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKG 3039
[Close]
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = -2 
Query:  296 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI--HGFEVLDLMEKAQTGSG 529
            GG SI+G+KF DE   + KH   G+LSMAN+GPNTNGSQFF++      L+G + VFG V      +V+  +E   + SG
Sbjct:  129 GGKSIYGEKFADE-NFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSG 207
The following BLAST results are available for this feature:
BLAST of CF838586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
RBP2_MOUSE6.262e-1147.44E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
CYPH_NEUCR8.179e-1146.25Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838586 ID=CF838586; Name=CF838586; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTGAAACAAGATTTAAATTACTAACGTTTCCTCATCG
TCAATCTCACCATTTGATGCTACATAAAATTCTGCGGTTACTTCTTCCTT
CAAGCCCATAGTCATAACTGGGAAAAGAAAAATGTACAGAGTCTACTGGG
AGTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAAT
GTTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGTGGGTTAGC
ATGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTG
ATCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATT
ACTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATA
AGAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTG
ACAGTATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTG
AACTTCTTGCCCCATATGCTTGTTCCGCCT
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