CF838586

Overview
NameCF838586
Unique NameCF838586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF DE     KH   G+LSMAN+GP TNGSQFFI+    PHL+G + VFG+V+ G +V+  +E  QT  GD+PL+E++I
Sbjct:   78 GGESIYGAKFADE-NFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKI 163          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.248e-19
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  236 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFE-VLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 529
            GG+SIWGK F DE      H+ARGI+SMAN G NTN SQFFI+Y    HL+  +T+F +VI G +  L  ME   T   DRPL +I I  + I  +P A
Sbjct:  391 GGSSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKDMIILIDPFA 489          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.248e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = -2
Query:  290 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDR 529
            GGTSI+G++F DEI   L+H   GILSMAN+GPNTNGSQFFI+ A  P L+G +T+FGRV  G  V+  M   +T + DR
Sbjct:   66 GGTSIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVKRMGLVKTDANDR 145          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL2_USTMA (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Ustilago maydis GN=CYP8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -2
Query:  242 GGTSIWGKKFNDEIRE--SLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFE--VLDLMEKAQTGSG-DRPLAEIRINRVTIHANP 529
            GG+SIW   F DE  E  + KH+ RG+LSMAN G +TN SQFFI+Y   PHL+G +TVFGR++ G +   L  ME+  +  G DRPL +I+I  V +  +P
Sbjct:  354 GGSSIWNSNFRDEFNEPGAFKHDTRGVLSMANKGKDTNASQFFITYRGVPHLDGKHTVFGRLVDGDKDATLTKMEQVPSEQGTDRPLKKIQIQDVLVTEDP 454          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+KF DE    L HN   +LSMANSGPNTNGSQFFI+    PHL+G + VFG VI G  ++  +E+++ G+ DRP+ + +I
Sbjct:   85 GGESIYGEKFEDE-NFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLERSEKGANDRPVEDWKI 170          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+ F DE   +LKH  +G+LSMAN+GPNTNGSQFFI++   P L+G +TVFG+++ G +VLDL+E+  + SG  P A+I I
Sbjct:   84 GGESIYGRTFKDE-NFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSG-MPSAKIEI 168          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  281 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLA 529
            GG SI+G+ FNDE    +KH   G LSMAN+G NTNGSQFFI+ A+ PHLNG +TVFG V+ GF+++  +E A+T   DRP A
Sbjct:   84 GGESIYGRTFNDE-NFLVKHKI-GCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL2_EMENI (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Emericella nidulans GN=cyp8 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.374e-18
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  242 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH----GFEVLDLMEKAQTG-SGDRPLAEIRINRVTIHANP 529
            GG SIWGK FNDE    LKH++RG LSMAN G NTN SQFFI+Y   PHLN  +T+FG VI         L+ +E      + +RP  +IRI  VTI  +P
Sbjct:  372 GGESIWGKYFNDEFEGPLKHDSRGTLSMANKGKNTNSSQFFIAYRALPHLNLKHTIFGHVIDDPTPSSPTLNKLETHPVNPTTNRPTPDIRIVDVTIFVDP 472          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.101e-18
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  242 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG-DRPLAEIRINRVTIHANP 529
            GG SIW K F+DE      H+ARG+LSMAN G NTNGSQFFI++    +L+  +T+FGR++ G + L  +EK +T  G D P+  + I R  +  +P
Sbjct:  341 GGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEGTDVPMVSVVIMRAEVFVDP 437          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.050e-18
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = -2
Query:  254 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 529
            GG SIW K F DEI  +LKH+    +SMANSGPNTNGSQFFI+    P L+G +T+F R   G +V+  +E+ +T   DRPL   +I  ++I
Sbjct:  516 GGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQGETDKYDRPLEPTKIINISI 607          
The following BLAST results are available for this feature:
BLAST of CF838586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
CYPX_USEUD2.805e-1952.87Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIL2_NEUCR6.248e-1949.49Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
PPIL1_RHIOR6.248e-1956.25Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIL2_USTMA1.392e-1848.51Peptidyl-prolyl cis-trans isomerase-like 2 OS=Usti... [more]
PPID_CANAL1.392e-1851.72Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
CYP6_RHIOR1.392e-1854.02Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_DICDI1.818e-1856.63Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIL2_EMENI2.374e-1850.50Peptidyl-prolyl cis-trans isomerase-like 2 OS=Emer... [more]
CYP4_CAEEL3.101e-1845.36Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
CYP9_SCHPO4.050e-1848.91Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_04K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838586 ID=CF838586; Name=CF838586; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTGAAACAAGATTTAAATTACTAACGTTTCCTCATCG
TCAATCTCACCATTTGATGCTACATAAAATTCTGCGGTTACTTCTTCCTT
CAAGCCCATAGTCATAACTGGGAAAAGAAAAATGTACAGAGTCTACTGGG
AGTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAAT
GTTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGTGGGTTAGC
ATGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTG
ATCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATT
ACTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATA
AGAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTG
ACAGTATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTG
AACTTCTTGCCCCATATGCTTGTTCCGCCT
back to top