CF838586

Overview
NameCF838586
Unique NameCF838586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+FGRV  G  +++ +   +T S DRP+ +++I
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+FGRV  G  +++ +   +T S DRP+ +++I
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+FGRV  G  +++ +   +T S DRP+ +++I
Sbjct:   73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = -2
Query:  266 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 529
            GG SI+G+KF DE   + KH+   +LSMAN+GPNTNGSQ FI+ A  PHL+G + VFG VI G  V+  +E+ +T + DRPLA++RI+
Sbjct:   84 GGESIYGEKFEDE-NFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQET-AADRPLADVRID 169          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+ F+DE   +LKH    +LSMAN GP+TNGSQFFI+  + PHL+G + VFG VI G EV+  +E  +TG+ D+P+ ++ I
Sbjct:   85 GGYSIYGRTFDDE-NLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENLETGNEDKPVCKVEI 170          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF DE    L+H   G+LSMAN+G +TNGSQFFI+ A  P L+G + VFG V+ G++++D ++    G  DRPL +++I
Sbjct:  104 GGKSIYGAKFKDE-NFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKI 189          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG S++G+ F DE    L H   G+LSMAN+GPNTNGSQFFI   K   L+G + VFG+VI G EV+ L+E+ +T  GDRP  ++ I
Sbjct:  163 GGKSVYGRTFKDE-NFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVI 248          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF+DE    +KH    +LSMAN+GPNTNGSQFFI+    PHL+G + VFG V++G  V+  +E   T SGDRP  E  I
Sbjct:   88 GGESIYGNKFDDEAFP-IKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALI 173          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G++F DE    LKH   G LSMAN+GPNTNG+QFFI+  + P L+G + VFG+V+ G  V+  +E  QT S DRP+  ++I
Sbjct:  107 GGFSIYGERFPDE-NFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKI 192          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G +F DE    LKH  +G+LSMAN+G +TNGSQFFI+      L+G + VFG V+ G+E+++ +E ++TG+ DRP+  ++I
Sbjct:  105 GGKSIYGDRFKDE-NFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKI 190          
The following BLAST results are available for this feature:
BLAST of CF838586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
PPIL1_MOUSE5.289e-1847.13Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
PPIL1_HUMAN5.289e-1847.13Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
PPIL1_BOVIN5.289e-1847.13Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
PPID_ASHGO9.022e-1853.41Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
CYP8_CAEEL9.022e-1850.57Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIB_EMENI1.178e-1748.28Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CP20B_ARATH1.539e-1751.72Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPID_GIBZE2.010e-1752.87Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPIB_SCHJA2.010e-1750.57Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_GIBZE2.010e-1747.13Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838586 ID=CF838586; Name=CF838586; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTGAAACAAGATTTAAATTACTAACGTTTCCTCATCG
TCAATCTCACCATTTGATGCTACATAAAATTCTGCGGTTACTTCTTCCTT
CAAGCCCATAGTCATAACTGGGAAAAGAAAAATGTACAGAGTCTACTGGG
AGTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAAT
GTTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGTGGGTTAGC
ATGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTG
ATCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATT
ACTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATA
AGAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTG
ACAGTATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTG
AACTTCTTGCCCCATATGCTTGTTCCGCCT
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