CF838586

Overview
NameCF838586
Unique NameCF838586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G  F DE   ++KHN   +LSMAN G +TNGSQFFI+    PHL+G + VFG+VI G EV+  +E  +T +  +P AE+RI
Sbjct:   86 GGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 171          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G  F DE   ++KHN   +LSMAN G +TNGSQFFI+    PHL+G + VFG+VI G EV+  +E  +T +  +P AE+RI
Sbjct:   86 GGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 171          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  278 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAE 529
            GG SI+G+KF DE    L H+   +LSMAN+G NTNGSQFFI+    PHLNG + VFG VI G  ++  +E+   G  D+P+ +
Sbjct:   86 GGESIYGEKFEDE-NFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLERCDKGENDKPVED 168          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF DE    L+H  +G+LSMAN+G +TNGSQFFI+ A    L+G + VFG V+ G++++D ++    G  DRP  +++I
Sbjct:  105 GGKSIYGNKFEDE-NFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKI 190          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  254 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 529
            GG SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  254 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 529
            GG SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  254 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 529
            GG SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  551 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 643          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  287 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRP 529
            GG SI+G+KF DE     KH+  G+LSMAN+GPNTNGSQFFI+    PHL+G + VFG+VI G  V   +E  +  +G++P
Sbjct:   94 GGESIYGEKFEDE-NFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKP 172          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF DE    LKH+ +G+LSMAN+G +TNGSQFFI+      L+G + VFG V+ G++V++ +E  +TG  D P   I+I
Sbjct:  105 GGKSIYGDKFPDE-NFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKI 190          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+KF DE  E LKH+   +LSMANSGP TNGSQFFI+    PHL+G + VFG VI+G  V+  +E   T   D+P+ ++ I
Sbjct:   83 GGESIYGEKFPDENFE-LKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNT-QADKPVKDVTI 167          
The following BLAST results are available for this feature:
BLAST of CF838586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
PPIG_MOUSE4.950e-1650.57Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN4.950e-1650.57Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPID_DEBHA4.950e-1648.81Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPIB_ARTBE4.950e-1645.98Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPWD1_PONAB6.465e-1644.09Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN6.465e-1644.09Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_BOVIN6.465e-1644.09Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPID_MOUSE6.465e-1651.8540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPIB_NEUCR6.465e-1648.28Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPID_ASPOR8.444e-1651.72Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838586 ID=CF838586; Name=CF838586; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTGAAACAAGATTTAAATTACTAACGTTTCCTCATCG
TCAATCTCACCATTTGATGCTACATAAAATTCTGCGGTTACTTCTTCCTT
CAAGCCCATAGTCATAACTGGGAAAAGAAAAATGTACAGAGTCTACTGGG
AGTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAAT
GTTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGTGGGTTAGC
ATGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTG
ATCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATT
ACTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATA
AGAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTG
ACAGTATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTG
AACTTCTTGCCCCATATGCTTGTTCCGCCT
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