CF838586

Overview
NameCF838586
Unique NameCF838586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  293 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGD 529
            GG SI+G KF DE    LKH   GILSMANSGPNTNGSQFFI   K   L+G + VFG+V+ G+ V+  ME   +  G+
Sbjct:   81 GGESIYGSKFEDE-NFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGN 158          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            G  SI+G +F DE    +KH   G+LSMANSGPNTNG QFFI+ A    L+G + VFGRVI G   +  +E   TG+ +RP  ++RI
Sbjct:   88 GSFSIYGAQFEDE-NFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENVPTGANNRPKLQVRI 173          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G KF DE    LKH   G+LSMAN+G +TNGSQFFI   K   L+  + VFG V+ G +V+  ME  +T  GD+P+  I I
Sbjct:  121 GGKSIYGSKFPDE-NFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITI 206          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = -2
Query:  266 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 529
            GG SI+G+ F+DE +  LKH+   +LSMAN GPN+N SQFFI+ A  PH NG + VFG V+ G  V+D ++        +PLA++ I+
Sbjct:   83 GGFSIYGRYFDDE-KFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLIS 169          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G++F DE    L+H   G LSMAN+G +TNGSQFFI+ AK   L+G + VFG+++ G +V+  +E    G+GDRP+ ++ I
Sbjct:   96 GGRSIYGERFEDE-NFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVI 181          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+KF DE    LKH   G LSMAN+G +TNGSQFFI+  K P L+G + VFG+++ G +V+  +E+ +   GDRP  ++ I
Sbjct:   99 GGRSIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII 184          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  293 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGD 529
            GG SI+G+KF DE  E LKH+   +LSMAN+GPNTNGSQFFI+    PHL+G + VFG+VI G   +  +E  +T + D
Sbjct:   77 GGESIYGEKFEDENFE-LKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDD 154          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+KF DE   +LKH+   +LSMAN+G NTNGSQ FI+    PHL+G + VFG VI G  ++  +E   T   D+P  E++I
Sbjct:   85 GGESIYGEKFEDE-NFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKI 170          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  269 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 529
            GG SI+G+KF DE  E LKH+   +LSMANSGP TNGSQFFI+    PHL+G + VFG VI+G  V+  +E   T   D+P  ++ I
Sbjct:   84 GGESIYGEKFPDENFE-LKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTI 168          
BLAST of CF838586 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  296 GGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 529
            GG SI+G+KF DE   +LKHN  G+LSMAN+GPNTNGSQFFI+    P L+G + VFG V  G +V+  +E   + SG
Sbjct:   72 GGKSIYGEKFPDE-NFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSG 148          
The following BLAST results are available for this feature:
BLAST of CF838586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
CP19C_ARATH8.444e-1654.43Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIH_CRYNE1.103e-1549.43Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIB_CRYNE1.103e-1549.43Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYP9_CAEEL1.103e-1546.59Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP6_CAEEL1.103e-1547.13Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CYP5_CAEEL1.103e-1548.28Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPID_SCHPO1.440e-1553.1640 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPID_KLULA1.440e-1548.28Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
PPID_EMENI1.440e-1551.72Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
CYPH_SCHPO1.440e-1553.85Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838586 ID=CF838586; Name=CF838586; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTGAAACAAGATTTAAATTACTAACGTTTCCTCATCG
TCAATCTCACCATTTGATGCTACATAAAATTCTGCGGTTACTTCTTCCTT
CAAGCCCATAGTCATAACTGGGAAAAGAAAAATGTACAGAGTCTACTGGG
AGTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAAT
GTTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGTGGGTTAGC
ATGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTG
ATCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATT
ACTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATA
AGAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTG
ACAGTATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTG
AACTTCTTGCCCCATATGCTTGTTCCGCCT
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