CF838602

Overview
NameCF838602
Unique NameCF838602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_ASPOR (Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 8.818e-54
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_ASPNC (Histone H3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hht1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.818e-54
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_ASPFU (Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 8.818e-54
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_ASPCL (Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.818e-54
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 8.818e-54
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.152e-53
Identity = 107/136 (78.68%), Postives = 113/136 (83.09%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP TGGVKKPHRYRP TVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33_PICGU (Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.504e-53
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.504e-53
Identity = 108/136 (79.41%), Postives = 112/136 (82.35%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI PKDI LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.964e-53
Identity = 106/136 (77.94%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQ+A KAARK+AP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.351e-53
Identity = 106/136 (77.94%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PG VALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGAVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ASPOR8.818e-5478.68Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3[more]
H3_ASPNC8.818e-5478.68Histone H3 OS=Aspergillus niger (strain CBS 513.88... [more]
H3_ASPFU8.818e-5478.68Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 S... [more]
H3_ASPCL8.818e-5478.68Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV... [more]
H31_CANAL8.818e-5478.68Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO1.152e-5378.68Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H33_PICGU1.504e-5378.68Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3... [more]
H31_USTMA1.504e-5379.41Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]
H3_COCIM1.964e-5377.94Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H3_AJECA3.351e-5377.94Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06A14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bp
GCCGTATAGCGTTGCATTCAGATCTGTGCATTTTGCAGTTTGCGTTGGTG
ATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAGCTGGA
GGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGC
TCCAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTG
TCGCCCTCCGTGAAATCCGCAAATATCACAAGAGCACTGAGCTTTTGATC
CGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAA
GACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGG
CAGAGGCTTATCTCGCGGGTCTGTTCGAGGACACCAACCTTTGTGCTATC
CATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCG
AATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTT
TCCTATTTAGTTTGCTAGTTTTTCTTTATTCCGGCTTTTACATGTAAAGA
ATGATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAA
TGTTTATTGTGGAGTTTATCTTAAAAAAAAAAAAAAAA
back to top