CF838602

Overview
NameCF838602
Unique NameCF838602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.273e-52
Identity = 106/136 (77.94%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.273e-52
Identity = 106/136 (77.94%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.273e-52
Identity = 110/136 (80.88%), Postives = 112/136 (82.35%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDF TDLRFQS                  EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.837e-52
Identity = 107/136 (78.68%), Postives = 112/136 (82.35%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRK LATKAARKSA  TG VKK HR+RPGTVALREIR+Y KSTELL+RKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 4.096e-51
Identity = 106/137 (77.37%), Postives = 111/137 (81.02%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGK PRK+LATKAARK+  P  GGVK+ HR+RPGTVALREIRKY KST+LLIRKLPFQRLVREIAQDFK DLRFQSH                FEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.096e-51
Identity = 102/135 (75.56%), Postives = 111/135 (82.22%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS G KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKY KST+LLIRKLPFQRLVR+IA +FK +LRFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.096e-51
Identity = 102/135 (75.56%), Postives = 111/135 (82.22%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS G KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKY KST+LLIRKLPFQRLVR+IA +FK +LRFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 5.349e-51
Identity = 102/136 (75.00%), Postives = 111/136 (81.62%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARK+ GGKAPRK +  K+ARK+A TT G+KKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQ+FK DLRFQS                 FEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.655e-50
Identity = 105/136 (77.21%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTA KS G KAPRKQLATKAA KSAP  GGVKKPH YRPGTVAL EI +Y KSTELLI KLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRV+IMPKDIQL RRIRGERA
Sbjct:    1 MARTKQTACKSTGRKAPRKQLATKAAHKSAPAMGGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 7.725e-50
Identity = 100/135 (74.07%), Postives = 110/135 (81.48%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS G KAPRKQLATKAARKSAP +GGVKKPH++RPGTVALREIRKY K+T+LLIRKLPFQRLVR+IA + K D+RFQS                 FEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CANGA1.273e-5277.94Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO1.273e-5277.94Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H3L_HUMAN1.273e-5280.88Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H33L2_CAEEL2.837e-5278.68Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H3L2_ARATH4.096e-5177.37Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H31_TETTH4.096e-5175.56Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY4.096e-5175.56Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_EUPCR5.349e-5175.00Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H3L_CAIMO2.655e-5077.21Histone H3-like OS=Cairina moschata PE=3 SV=2[more]
H33_TETPY7.725e-5074.07Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bp
GCCGTATAGCGTTGCATTCAGATCTGTGCATTTTGCAGTTTGCGTTGGTG
ATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAGCTGGA
GGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGC
TCCAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTG
TCGCCCTCCGTGAAATCCGCAAATATCACAAGAGCACTGAGCTTTTGATC
CGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAA
GACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGG
CAGAGGCTTATCTCGCGGGTCTGTTCGAGGACACCAACCTTTGTGCTATC
CATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCG
AATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTT
TCCTATTTAGTTTGCTAGTTTTTCTTTATTCCGGCTTTTACATGTAAAGA
ATGATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAA
TGTTTATTGTGGAGTTTATCTTAAAAAAAAAAAAAAAA
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