CF838602

Overview
NameCF838602
Unique NameCF838602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.242e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.242e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 115/136 (84.56%), Postives = 116/136 (85.29%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_HUMAN2.242e-5784.56Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN2.242e-5784.56Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H32_WHEAT2.929e-5784.56Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_TOBAC2.929e-5784.56Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR2.929e-5784.56Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_PEA2.929e-5784.56Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ORYSJ2.929e-5784.56Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI2.929e-5784.56Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_ONOVI2.929e-5784.56Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA2.929e-5784.56Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bp
GCCGTATAGCGTTGCATTCAGATCTGTGCATTTTGCAGTTTGCGTTGGTG
ATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAGCTGGA
GGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGC
TCCAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTG
TCGCCCTCCGTGAAATCCGCAAATATCACAAGAGCACTGAGCTTTTGATC
CGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAA
GACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGG
CAGAGGCTTATCTCGCGGGTCTGTTCGAGGACACCAACCTTTGTGCTATC
CATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCG
AATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTT
TCCTATTTAGTTTGCTAGTTTTTCTTTATTCCGGCTTTTACATGTAAAGA
ATGATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAA
TGTTTATTGTGGAGTTTATCTTAAAAAAAAAAAAAAAA
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