CF838602

Overview
NameCF838602
Unique NameCF838602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.113e-56
Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFK DLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 4.229e-56
Identity = 112/136 (82.35%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRL+REIAQDFKTDLRFQS                 FEDTNLC IHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 217.238 bits (552), Expect = 5.523e-56
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+Y KSTELLIR+ PFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKY KSTELL RKLPFQRLVREIAQDFKTDLRFQSH                FEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.230e-55
Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.230e-55
Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.099e-55
Identity = 111/136 (81.62%), Postives = 113/136 (83.09%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQ                  FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.741e-55
Identity = 113/136 (83.09%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTEL+IRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 6.106e-55
Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS GGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++ KSTELL+RKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135          
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.042e-54
Identity = 112/137 (81.75%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQD+KTDLRFQSH                FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_LILLO1.113e-5683.82Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H31T_HUMAN4.229e-5682.35Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3_CAEEL5.523e-5682.35Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H3L1_ARATH7.213e-5682.35Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H3_VOLCA1.230e-5583.82Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2[more]
H32_CHLRE1.230e-5583.82Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H3L_XENLA2.099e-5581.62Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H31_CHLRE2.741e-5583.09Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3_GRIJA6.106e-5580.74Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H33B_LILLO1.042e-5481.75Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bp
GCCGTATAGCGTTGCATTCAGATCTGTGCATTTTGCAGTTTGCGTTGGTG
ATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAGCTGGA
GGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGC
TCCAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTG
TCGCCCTCCGTGAAATCCGCAAATATCACAAGAGCACTGAGCTTTTGATC
CGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAA
GACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGG
CAGAGGCTTATCTCGCGGGTCTGTTCGAGGACACCAACCTTTGTGCTATC
CATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCG
AATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTT
TCCTATTTAGTTTGCTAGTTTTTCTTTATTCCGGCTTTTACATGTAAAGA
ATGATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAA
TGTTTATTGTGGAGTTTATCTTAAAAAAAAAAAAAAAA
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