CF838602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3) HSP 1 Score: 219.55 bits (558), Expect = 1.113e-56 Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFK DLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3) HSP 1 Score: 217.624 bits (553), Expect = 4.229e-56 Identity = 112/136 (82.35%), Postives = 114/136 (83.82%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRL+REIAQDFKTDLRFQS FEDTNLC IHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4) HSP 1 Score: 217.238 bits (552), Expect = 5.523e-56 Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+Y KSTELLIR+ PFQRLVREIAQDFKTDLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56 Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKY KSTELL RKLPFQRLVREIAQDFKTDLRFQSH FEDTNLCAIHAKRVTIMPKD+QLARRIR ERA Sbjct: 1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2) HSP 1 Score: 216.083 bits (549), Expect = 1.230e-55 Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.230e-55 Identity = 114/136 (83.82%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2) HSP 1 Score: 215.312 bits (547), Expect = 2.099e-55 Identity = 111/136 (81.62%), Postives = 113/136 (83.09%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQ FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 2.741e-55 Identity = 113/136 (83.09%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTEL+IRKLPFQRLVREIAQDFKTDLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3) HSP 1 Score: 213.772 bits (543), Expect = 6.106e-55 Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466 MARTKQTARKS GGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++ KSTELL+RKLPFQRLVREIAQDFK+DLRFQS FEDTNLCAIHAKRVTIMPKDIQLARRIRGER Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3) HSP 1 Score: 213.001 bits (541), Expect = 1.042e-54 Identity = 112/137 (81.75%), Postives = 115/137 (83.94%), Query Frame = 2 Query: 62 MARTKQTARKSAGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469 MARTKQTARKS GGKAPRKQLATKAARKS PT GG+K+P RYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQD+KTDLRFQSH FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137 The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bpback to top |