CF838602

Overview
NameCF838602
Unique NameCF838602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.360e-54
Identity = 108/136 (79.41%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.777e-54
Identity = 110/135 (81.48%), Postives = 112/135 (82.96%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS GGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.777e-54
Identity = 113/136 (83.09%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKY KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 3.958e-54
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTAR S GGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKY KSTE+LIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.958e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.958e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.958e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H31_DEBHA (Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 3.958e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 469
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_TRIRE (Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.169e-54
Identity = 108/135 (80.00%), Postives = 114/135 (84.44%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of CF838602 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.169e-54
Identity = 108/135 (80.00%), Postives = 114/135 (84.44%), Query Frame = 2 
Query:   62 MARTKQTARKSAGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYHKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHXXXXXXXXXXXXXXXXFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 466
            MARTKQTARKS GGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+Y KSTELLIRKLPFQRLVREIAQDFK+DLRFQS                 FEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
The following BLAST results are available for this feature:
BLAST of CF838602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_SCHPO1.360e-5479.41Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_MORAP1.777e-5481.48Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H33_CHLRE1.777e-5483.09Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H3L5_ARATH3.958e-5480.15Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H31_PICST3.958e-5479.41Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU3.958e-5479.41Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]
H31_LODEL3.958e-5479.41Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H31_DEBHA3.958e-5479.41Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1... [more]
H3_TRIRE5.169e-5480.00Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2[more]
H3_PHANO5.169e-5480.00Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838602 ID=CF838602; Name=CF838602; organism=Citrus sinensis; type=EST; length=638bp
GCCGTATAGCGTTGCATTCAGATCTGTGCATTTTGCAGTTTGCGTTGGTG
ATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAGCTGGA
GGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGC
TCCAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTG
TCGCCCTCCGTGAAATCCGCAAATATCACAAGAGCACTGAGCTTTTGATC
CGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAA
GACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGG
CAGAGGCTTATCTCGCGGGTCTGTTCGAGGACACCAACCTTTGTGCTATC
CATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCG
AATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTT
TCCTATTTAGTTTGCTAGTTTTTCTTTATTCCGGCTTTTACATGTAAAGA
ATGATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAA
TGTTTATTGTGGAGTTTATCTTAAAAAAAAAAAAAAAA
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