CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L1_MOUSE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Mus musculus GN=Agxt2l1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.543e-26
Identity = 73/198 (36.87%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  277 SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGADGE----MYAKDVQDLI 843
            S  + LA R+  + PS    ++  P+ ++  + QY+FDE G RYLD    +A V  GHCHP VV +   Q++ +  ++  +L+  I +FA+ L + +P  L V +FTNSG+EAN+LA+ +AR + G  D+I+L +AYHG+ +  +     S +KF    +V +  VH A  PD YRG +  D E     YA +V+ +I
Sbjct:    6 SKQDTLALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCHPEVVKAAAKQMELLNTNS-RFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEI---SPYKFQKGKDVKRETVHVAPAPDTYRGKYREDHEDPSTAYADEVKKII 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L2_MOUSE (Alanine--glyoxylate aminotransferase 2-like 2 OS=Mus musculus GN=Agxt2l2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.321e-26
Identity = 69/186 (37.10%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  301 RKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            R+  LS S    + + P+ ++ G+ QYL+DE GR YLD    +A V  GHCHP VV +   Q   + ++   YL+  I D+A+ L+  +P  L V +F NSG+EAN+LA+ +AR YTG  D++ L +AYHG+ +  +  +          +  VH A  PD YRG +  D     E YA +V+ +I
Sbjct:   15 RRRLLSSSCRLFFPEDPVKIIRGQGQYLYDEQGREYLDCINNVAHV--GHCHPTVVQAAHEQ-NLVLNTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEANDLALRLARQYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLGGQKEWVHVAPLPDTYRGPYREDHPNPAEAYANEVKHVI 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L1_BOVIN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Bos taurus GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26
Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  277 SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            S  E LA R+  + PS    ++  P+ +V  + QY+FDE G +YLD    +A V  GHCHP VV +   Q++ +  ++  +L+  I ++A+ L++ +P  L V +FTNSG+EAN+LA+ +AR + G  D+I+L +AYHG+ +  +     S +KF    +V +  VH A  PD YRG +  D       YA +V+ +I
Sbjct:    6 SKQETLALRRKHIGPSCKVFFAADPIKIVRAQRQYMFDEKGDQYLDCINNVAHV--GHCHPEVVKAAQKQMELLNTNS-RFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEI---SPYKFQKGKDVKKEFVHVAPAPDTYRGKYREDHVDPASAYADEVKKII 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L2_HUMAN (Alanine--glyoxylate aminotransferase 2-like 2 OS=Homo sapiens GN=AGXT2L2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.264e-25
Identity = 64/194 (32.99%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  274 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            P AD +  +++   S         P+ +V  + QY++DE G  Y+D    +A V  GHCHP VV +   Q  ++ ++   YL+  I D+A+ L+  +P  L V +F NSG+EAN+LA+ +AR YTG  D++ L +AYHG+ +  +  +       +  +  VH A  PD YRG +  D       YA +V+ ++
Sbjct:    7 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVAHV--GHCHPLVVQAAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEQLCVFYFLNSGSEANDLALRLARHYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPNPAMAYANEVKRVV 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2L_DROME (Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.109e-24
Identity = 75/181 (41.44%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  340 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-------VHHALNPDPYRGVF------GAD-GEMYAKDVQDL 840
            S PL +V G+ QY+FDE G RYLD    +A V  GHCHP VV +   Q+  I  +   +L+  +   A  L SKMP  L V FF NSG+EAN+LA+ +AR +T   D+I+L +AYHG+    M     S +KFN  Q G       VH A  PD Y G F       AD G +YA+ ++++
Sbjct:   39 SDPLKIVRGQGQYMFDEEGTRYLDCINNVAHV--GHCHPEVVRAGALQMATISTNN-RFLHDELVQCARTLTSKMPEPLSVCFFVNSGSEANDLALRLARNFTKRQDVITLDHAYHGHLQSVMEV---SPYKFN--QPGGEAKPDYVHVAPCPDVYGGKFTDKMYPDADMGALYAQPIEEI 211          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L1_DANRE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Danio rerio GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.302e-24
Identity = 68/191 (35.60%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  301 RKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-----QTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            RK  + PS    +   P+ +V  K QY+++E   +YLD    +A V  GHCHP VV +   Q++ +  ++  +L+ ++  +A+ L + +P  L V +F NSG+EAN+LA+ +A  YTG  DII+L NAYHG+ +  +     S +KF+ +        VH AL+PD YRG +  D       YA++V+++I
Sbjct:   15 RKKHVGPSCKVFFDHDPIKIVRAKGQYMYNEKDEKYLDCINNVAHV--GHCHPDVVSAGAKQMELLNTNS-RFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEANDLALRLAWQYTGHKDIITLDNAYHGHVSSLIDI---SPYKFHQMAGAEPSQHVHVALSPDTYRGKYREDHPDPATAYAENVKEVI 199          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_METKA (Acetylornithine aminotransferase OS=Methanopyrus kandleri GN=argD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.437e-23
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  337 YSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            YS+ P+ +V G+   ++D+ G  Y+D   GIA    GHCHP VV+++  Q++R+ H + LY N   A+ A  LA   P +L  VFF NSGTE+ E AI +AR +TGC   I+    +HG   G + AT    WK
Sbjct:   15 YSRFPVTLVPGEGARVWDDEGNEYIDLVAGIAVNVLGHCHPAVVEAVKEQVERLIHCSNLYYNEPQAEAARLLAEAAPKDLNKVFFCNSGTESVECAIKLARKFTGCTKFIAFEGGFHGRTMGALSAT----WK 144          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2L_CAEEL (Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 74/194 (38.14%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  268 DGPSADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-----GVHHALNPDPYRGVFG-ADGEMYAKD 828
            D  S +EIL +RK  +       YS  P  V    MQYL+DE   ++LD    +  V  GHCHP VV++I  Q+       V +++  + D AE + S +PG L  V F NSG+EAN+LA+ +AR YT   D I + +AYHG+   TM     S +KF+   T      VH A  PD +RG    AD E+  +D
Sbjct:   23 DVRSKEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNVQHV--GHCHPKVVEAISKQLAT-STCNVRFVSTQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLARDYTKHKDAIVIEHAYHGHVTTTM---ELSPYKFDHGSTVSQPDWVHVAPCPDVFRGKHRLADNELTNED 209          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_PYRAB (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus abyssi GN=argD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  334 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHH 765
            LY K L +V G+  Y++D  G+RYLD   GI     GH HP  V+ + NQ+ ++  +  ++ +    +  E L+  +  N + V+  NSGTEA E A+  ARLYTG  +II++ NA+HG   G + AT +S +K  F  +  G  H
Sbjct:    3 LYRKRLKIVRGEGIYVWDSEGKRYLDLIAGIGVAILGHNHPKWVEEVGNQLNKLVVAGPMFEHEEKEEMLEELSRWV--NFEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKSKYKKDFEPLVPGFKH 146          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 66/209 (31.58%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  280 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHH------------------ALNPDPYRGVFGA--DGEMYAKDVQDL 840
            ++EI+   + F+  +      +P+ +  GK   ++D  G  Y+D F G+A    GH HP V  +I +Q +R+ HS+ +Y      + A+ L +  P +   VFF NSG EANE AI +AR +TG ++II+  N++HG    T+ AT Q  +   F  +  G  H                  A+  +P +G  G     E Y KDVQ+L
Sbjct:    3 SEEIIELERKFIMQTYTR---QPIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDR--VFFANSGAEANEGAIKLARKFTGKSEIIAAENSFHGRTLATVTATGQKKYSEPFRPLPEGFKHVPYGDIGAMADAVGDETAAIILEPVQGEGGVIIPPEGYLKDVQEL 206          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
AT2L1_MOUSE2.543e-2636.87Alanine--glyoxylate aminotransferase 2-like 1 OS=M... [more]
AT2L2_MOUSE3.321e-2637.10Alanine--glyoxylate aminotransferase 2-like 2 OS=M... [more]
AT2L1_BOVIN5.665e-2636.36Alanine--glyoxylate aminotransferase 2-like 1 OS=B... [more]
AT2L2_HUMAN6.264e-2532.99Alanine--glyoxylate aminotransferase 2-like 2 OS=H... [more]
AGT2L_DROME3.109e-2441.44Alanine--glyoxylate aminotransferase 2-like OS=Dro... [more]
AT2L1_DANRE5.302e-2435.60Alanine--glyoxylate aminotransferase 2-like 1 OS=D... [more]
ARGD_METKA3.437e-2341.04Acetylornithine aminotransferase OS=Methanopyrus k... [more]
AGT2L_CAEEL1.444e-2138.14Alanine--glyoxylate aminotransferase 2-like OS=Cae... [more]
ARGD_PYRAB6.067e-2036.99Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_METTH1.352e-1931.58Acetylornithine aminotransferase OS=Methanobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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