CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: DAT_ACIBA (Diaminobutyrate--2-oxoglutarate aminotransferase OS=Acinetobacter baumannii GN=dat PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 53/162 (32.72%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGE 813
            PL +   +  ++ D  G +YLD   G  T+  GH HP V+ SI + +        L L   + D F EAL + +PG  +   + F   SG +A E AI +A+ YTG + +IS    YHG   G++  T   + K   N +  GV     P  YR   G  GE
Sbjct:   36 PLAIAKAQGCWVTDVEGTQYLDCLAGAGTLALGHNHPAVIQSIQDTLASGLPLHTLDLTTPLKDAFTEALLAYLPGGKEEYCLQFCGPSGADATEAAIKLAKTYTGRSSVISFSGGYHGMTHGSLAMTGNLSAKNAVNGLMPGVQFMPYPHEYRCPLGLGGE 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_VIBVY (Acetylornithine aminotransferase OS=Vibrio vulnificus (strain YJ016) GN=argD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  358 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG------CNDIISLRNAYHGNAAGTMGATAQS 726
            V G+   ++D+NG  Y+D  GGIA  C GHCHP +V+++  Q  ++ H + +  N      A+ L        + VFF NSG EANE A+ +AR Y         ++II+ +  +HG    T+    Q+
Sbjct:   28 VKGQGSRIWDQNGNEYIDFAGGIAVSCLGHCHPVMVNALTEQAGKLWHLSNVMTNEPALRLAKKLTE--VSFAERVFFANSGAEANEAALKLARRYAADVYGPEKSEIIAFKQGFHGRTFFTVTVGGQA 154          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_VIBVU (Acetylornithine aminotransferase OS=Vibrio vulnificus GN=argD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  358 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG------CNDIISLRNAYHGNAAGTMGATAQS 726
            V G+   ++D+NG  Y+D  GGIA  C GHCHP +V+++  Q  ++ H + +  N      A+ L        + VFF NSG EANE A+ +AR Y         ++II+ +  +HG    T+    Q+
Sbjct:   28 VKGQGSRIWDQNGNEYIDFAGGIAVSCLGHCHPVMVNALTEQAGKLWHLSNVMTNEPALRLAKKLTE--VSFAERVFFANSGAEANEAALKLARRYAADVYGPEKSEIIAFKQGFHGRTFFTVTVGGQA 154          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALPC (Putrescine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=patA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQS 726
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKS 194          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALCH (Putrescine aminotransferase OS=Salmonella choleraesuis GN=patA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQS 726
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKS 194          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ENTS8 (Putrescine aminotransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=patA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHAL--NPDPYRGVFG 801
            G +  L D  G+ +LD  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E AI +A+ Y    G    ++   A+HG + G + ATA++ ++  F  +  G  H    N D  R + G
Sbjct:   71 GGLNTLVDTQGQEFLDCLGGFGIFNVGHRNPVVVSAVENQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAAIKLAKAYQSPRGKFTFVAASGAFHGKSLGALSATAKAAFRKPFMPLLPGFRHVPFGNIDALRELLG 223          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOLC (Putrescine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=patA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G  ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGEEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: DAT_HAEIN (Diaminobutyrate--2-oxoglutarate aminotransferase OS=Haemophilus influenzae GN=dat PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 63/193 (32.64%), Postives = 87/193 (45.08%), Query Frame = 1
Query:  289 ILAKRKTFLS-----PSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLKVVFFTN-SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFGADGEMYAKDVQ 834
            ILA  + FL       S    Y + L     K Q  ++ D  G  YLD   G  T+  GH HP ++ +I + +        L L   + D F+E L S  P +  ++ FT  SG +ANE AI +A+ YTG  +II+    +HG   G +  T     K  V  +  GV     P  YR  FG  GE  AK V+
Sbjct:   10 ILASNQHFLDRQDVMESNVRSYPRKLPFAYAKAQGCWVTDVEGNEYLDFLAGAGTLALGHNHPILMQAIKDVLDSGLPLHTLDLTTPLKDAFSEELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNIIAFSGGFHGMTQGALALTGNLGAKNAVENLMPGVQFMPYPHEYRCPFGIGGEAGAKAVE 202          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_LACLA (Acetylornithine aminotransferase OS=Lactococcus lactis subsp. lactis GN=argD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 46/135 (34.07%), Postives = 69/135 (51.11%), Query Frame = 1
Query:  322 SLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            +LF  Y + P +++ G+ QYLFD+ G +YLD   GI  +  G+       ++  Q+  + H + LY N    D AE L+     +    FF NSGTEANE A+ +  L      I++  + +HG   G M AT Q
Sbjct:    3 NLFENYGRLPFSLIKGEDQYLFDDRGNKYLDFTSGIGVMNLGYSFEKGKVAVKAQLDSLSHLSNLYQNPLQEDVAEKLSQ---NHSYKAFFCNSGTEANEAALKLTHLIKKDQKILAFTDGFHGRTFGAMSATMQ 134          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ERWCT (Putrescine aminotransferase OS=Erwinia carotovora subsp. atroseptica GN=patA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  379 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHH 765
            L D  G  YLD  GG      GH +P V+ ++ +Q+ R    +   L+      A+ LA+  PGNLK  FF+NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+  ++  F  +  G HH
Sbjct:   76 LIDTQGNEYLDCLGGYGIFNVGHRNPNVIAAVESQLARQPLHSQELLDPLRGLLAKTLAALTPGNLKYSFFSNSGTESVEAALKLAKAYQSPRGKYTFIAATGAFHGKSLGALSATAKPAFRRPFMPLLPGFHH 209          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
DAT_ACIBA4.974e-1432.72Diaminobutyrate--2-oxoglutarate aminotransferase O... [more]
ARGD_VIBVY4.974e-1433.33Acetylornithine aminotransferase OS=Vibrio vulnifi... [more]
ARGD_VIBVU4.974e-1433.33Acetylornithine aminotransferase OS=Vibrio vulnifi... [more]
PAT_SALPC6.497e-1438.40Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALCH6.497e-1438.40Putrescine aminotransferase OS=Salmonella cholerae... [more]
PAT_ENTS86.497e-1435.71Putrescine aminotransferase OS=Enterobacter sakaza... [more]
PAT_ECOLC6.497e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
DAT_HAEIN6.497e-1432.64Diaminobutyrate--2-oxoglutarate aminotransferase O... [more]
ARGD_LACLA6.497e-1434.07Acetylornithine aminotransferase OS=Lactococcus la... [more]
PAT_ERWCT8.485e-1435.07Putrescine aminotransferase OS=Erwinia carotovora ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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