CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERE8 (Succinylornithine transaminase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=astC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+ H +  D
Sbjct:   27 VVRGEGATLWDQQGKSYIDFAGGIAVNALGHGHPAVKAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKPGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGISHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_WOLSU (Acetylornithine aminotransferase OS=Wolinella succinogenes GN=argD PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 57/177 (32.20%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  325 LFHLYSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-------IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 831
            + H Y +  +    GK   L+D  G+ Y+D   GIA    GH +  +  +I +Q K++ H++ LY     A  AE L  K+ G    VFF NSG EANE AI +AR +   ++       II+L +++HG     + AT Q           +HH   P P       DG +YAK++
Sbjct:   10 VLHSYGRNYVQFTQGKNATLWDSEGKDYIDFASGIAVCSVGHGNERLAGAICDQAKKLIHTSNLYYIEPQARLAEKLV-KLSGYDMRVFFANSGAEANEGAIKIARKFGESHEGEVKRYKIITLESSFHGRTITALKATGQEK---------MHHYFGPYP-------DGFVYAKNL 169          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_STAES (Acetylornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=argD PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  325 LFHLYSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            LF+ Y +  +  VD     L D++   YLD   GI     G  +  +  ++ NQ+  I HS  LYL+       E +A K+ G    + FF NSGTEANE AI +AR  TG ++II+ + ++HG   G M AT Q
Sbjct:    4 LFNNYKRDNIEFVDANQNELIDKDNNVYLDFSSGIGVTNLGF-NMEIYQAVYNQLNLIWHSPNLYLS----SIQEEVAQKLIGQRDYLAFFCNSGTEANEAAIKLARKATGKSEIIAFKKSFHGRTYGAMSATGQ 133          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_STAEQ (Acetylornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=argD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  325 LFHLYSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            LF+ Y +  +  VD     L D++   YLD   GI     G  +  +  ++ NQ+  I HS  LYL+       E +A K+ G    + FF NSGTEANE AI +AR  TG ++II+ + ++HG   G M AT Q
Sbjct:    4 LFNNYKRDNIEFVDANQNELIDKDNNVYLDFSSGIGVTNLGF-NMEIYQAVYNQLNLIWHSPNLYLS----SIQEEVAQKLIGQRDYLAFFCNSGTEANEAAIKLARKATGKSEIIAFKKSFHGRTYGAMSATGQ 133          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_MYXXA (Acetylornithine aminotransferase OS=Myxococcus xanthus GN=argD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  277 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHH 765
            S D ++ K K  L   L +    P  +  G+   ++D +GR YLD  GGIAT   GHCHP VV +   Q+  + H + ++ +    D A  L       L   FF NSG EANE  + + R            ++IS  +++HG    T+ AT Q+ ++  F  +  G  H
Sbjct:   18 STDALVQKAKRHL---LQNYKQPPFVLARGQGARVWDMDGREYLDLIGGIATCALGHCHPEVVAAAKAQLDSLWHVSNVFYSQPQIDLAAQLTEW--SGLSRAFFCNSGAEANEALLKLTRKVMKDRGTPERFEVISFDSSFHGRTLATVTATGQAKYQKGFEPLPAGFTH 183          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALAR (Putrescine aminotransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=patA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L +  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVNTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAILAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECO8A (Putrescine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=patA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ +A+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTVAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_CLOAB (Acetylornithine aminotransferase OS=Clostridium acetobutylicum GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 41/130 (31.54%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G+   L+D++G  Y+D   G+A  C GHC+P +V +I  Q  ++ H +  Y N    +  E L          VF  NSGTEA E  + +AR Y          +II + N++HG   G +  T Q  ++
Sbjct:   20 GEGTKLYDKDGNEYIDFVSGVAVNCLGHCNPSIVKAIEEQSSKLMHVSNYYWNENAMELTEILCKN--SEFDKVFMCNSGTEAIEAGLKLARKYALLHGDENKKEIIYMDNSFHGRTMGALSVTGQPKYQ 147          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: YKAB_BACPF (Uncharacterized aminotransferase in katA 3'region OS=Bacillus pseudofirmus PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 1
Query:  298 KRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG-ATAQSNWK 735
            K  + L+PS+   +   L VV  +  Y +  +G +YLD   GIA    GH HP +V +I      + H  +  + + +I   A+ LA  +PG+L   FF NSGTEA E A+ +A+  T    ++S    +HG   G++G +T++S ++
Sbjct:   11 KSASRLAPSMAKDHPN-LPVVKEEGCYYYGVDGVKYLDFTSGIAVTNVGHRHPKIVQAIKEAADHLTHGPIGVIQYESILKLADELADILPGDLDCFFFANSGTEAIEGALKLAKFVTKRPYVVSFTGCFHGRTQGSLGVSTSKSKYR 157          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+    +HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGVFHGKSLGALSATAKSTFR 197          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
ASTC_YERE88.485e-1432.69Succinylornithine transaminase OS=Yersinia enteroc... [more]
ARGD_WOLSU8.485e-1432.20Acetylornithine aminotransferase OS=Wolinella succ... [more]
ARGD_STAES8.485e-1437.04Acetylornithine aminotransferase OS=Staphylococcus... [more]
ARGD_STAEQ8.485e-1437.04Acetylornithine aminotransferase OS=Staphylococcus... [more]
ARGD_MYXXA8.485e-1430.99Acetylornithine aminotransferase OS=Myxococcus xan... [more]
PAT_SALAR1.108e-1336.72Putrescine aminotransferase OS=Salmonella arizonae... [more]
PAT_ECO8A1.108e-1336.72Putrescine aminotransferase OS=Escherichia coli O8... [more]
ARGD_CLOAB1.108e-1331.54Acetylornithine aminotransferase OS=Clostridium ac... [more]
YKAB_BACPF1.447e-1332.43Uncharacterized aminotransferase in katA 3'region ... [more]
PAT_SHIFL1.447e-1336.72Putrescine aminotransferase OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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