CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA1_STAS1 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 696
            P+ +  GK  YL+D +G +Y+D       +  GH HP++ ++I  Q    I + T   L     +FA+ L   +P +L+ + F NSGTEA    I +AR YT  N I+     YHG++
Sbjct:   36 PVMMRSGKGAYLYDVDGNKYIDYLQAYGPIITGHAHPHITEAIQEQAALGILYGTPTELE---IEFAKKLRDAIP-SLEKIRFVNSGTEAVMTTIRVARAYTKRNKIVKFAGQYHGHS 149          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA1_LISMH (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 693
            P+ +      Y +D +G +Y+D       +  GH HP++ ++I     +   + VLY     H I  FA+ L   +P +L+ V FTNSGTEA    I +AR YTG + II     YHG+
Sbjct:   36 PVTMERASGAYFYDVDGNKYIDYLAAFGPIITGHAHPHITEAIT----KAAQNGVLYGTPTKHEIT-FAKMLKEAIP-SLEKVRFTNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGH 148          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  322 SLFHLYS---KPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-------IISLRNAYHGNAAGTMGATAQSNWK 735
            SL H Y    +P  VV   G+   ++D+ GR YLD   GIA    GH  P +V ++  Q  ++ H++ ++ +      AE L S      K VF  NSGTEANE AI + R +            I++ R ++HG    ++ ATAQ  ++
Sbjct:   10 SLAHYYLPVYRPRQVVLERGQGSRVWDDAGREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTSNVFFSAPPLKLAEELVSASRFAHK-VFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQ 158          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_LEPIN (Acetylornithine aminotransferase OS=Leptospira interrogans GN=argD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDII-----SLRNAYHGNAAGTMGATAQ 723
            G  + LFD + ++Y+D   G+A    GH  P +++ + +Q  ++ H++ L+ +   +  AE L  +  PG    VF TNSGTEA E A  +AR Y     I+     SL  ++HG +   M  T Q
Sbjct:   36 GVNELLFDFDNKQYIDFHCGVAVTNLGHADPDIIEVVRSQADKLFHTSNLFYSEEASKLAELLILNSFPGK---VFLTNSGTEAIEGAFKLARKYAYSKSIVDPIILSLEKSFHGRSVSGMSLTGQ 158          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_LEPIC (Acetylornithine aminotransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDII-----SLRNAYHGNAAGTMGATAQ 723
            G  + LFD + ++Y+D   G+A    GH  P +++ + +Q  ++ H++ L+ +   +  AE L  +  PG    VF TNSGTEA E A  +AR Y     I+     SL  ++HG +   M  T Q
Sbjct:   36 GVNELLFDFDNKQYIDFHCGVAVTNLGHADPDIIEVVRSQADKLFHTSNLFYSEEASKLAELLILNSFPGK---VFLTNSGTEAIEGAFKLARKYAYSKSIVDPIILSLEKSFHGRSVSGMSLTGQ 158          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA_LEGPL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila (strain Lens) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  343 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 696
            +P+    GK  YL D + ++Y+D  G    +  GHCHP V++++ N    + HS + +          AE +AS MP +++ +   NSGTEA   AI +AR +T  N  I     YHG++
Sbjct:   32 EPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEAVDN----VLHSGMSFGAPTELEIQLAEKIASLMP-SIEKIRMVNSGTEATMTAIRLARGFTNKNKFIKFNGCYHGHS 146          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA_LEGPC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila (strain Corby) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  343 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 696
            +P+    GK  YL D + ++Y+D  G    +  GHCHP V++++ N    + HS + +          AE +AS MP +++ +   NSGTEA   AI +AR +T  N  I     YHG++
Sbjct:   32 EPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEAVDN----VLHSGMSFGAPTELEIQLAEKIASLMP-SIEKIRMVNSGTEATMTAIRLARGFTNKNKFIKFNGCYHGHS 146          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA_LEGPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila (strain Paris) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  343 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 696
            +P+    GK  YL D + ++Y+D  G    +  GHCHP V++++ N    + HS + +          AE +AS MP +++ +   NSGTEA   AI +AR +T  N  I     YHG++
Sbjct:   32 EPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEAVDN----VLHSGMSFGAPTELEIQLAEKIASLMP-SIEKIRMVNSGTEATMTAIRLARGFTNKNKFIKFNGCYHGHS 146          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: GSA1_EXISA (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVN-QIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN------AAGTMGATAQS 726
            P+ +  G+  Y +D +G RY+D       +  GH HP++ ++++N   K + + T   L     +FA+ L   +P ++  V FTNSGTEA    + +AR YTG   ++     YHG+      AAG+  AT  S
Sbjct:   40 PVYMERGEGAYFYDVDGNRYIDYLAAYGPIITGHAHPHIHEALMNASSKGLLYGTPHRLE---VEFAKKLKQAIP-SMDKVRFTNSGTEAVMTTVRVARAYTGRELVVKFSGCYHGHSDLMLIAAGSGPATLGS 169          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD1_PSESM (Acetylornithine aminotransferase 1 OS=Pseudomonas syringae pv. tomato GN=argD1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 1
Query:  358 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-----LY-TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHH 765
            V G    ++D+ GR  +D  GGIA    GHCHP +V ++  Q   + H + ++ N      A+ L        + VFF NSG EANE A  +AR     LY     +II+  N++HG    T+    Q  +   F    TG+ H
Sbjct:   29 VRGAGSRVWDQAGRELVDFSGGIAVNVLGHCHPALVGALTEQANNLWHVSNVFTNEPTLRLAKKLVDST--FAERVFFCNSGAEANEAAFKLARRVAHDLYGPEKYEIIAAVNSFHGRTLFTVSVGGQPKYSDGFGPKITGISH 170          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
GSA1_STAS16.723e-1133.90Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_LISMH6.723e-1134.45Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]
ARGD_XANAC6.723e-1132.67Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
ARGD_LEPIN6.723e-1132.54Acetylornithine aminotransferase OS=Leptospira int... [more]
ARGD_LEPIC6.723e-1132.54Acetylornithine aminotransferase OS=Leptospira int... [more]
GSA_LEGPL8.781e-1133.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Legion... [more]
GSA_LEGPC8.781e-1133.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Legion... [more]
GSA_LEGPA8.781e-1133.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Legion... [more]
GSA1_EXISA8.781e-1132.09Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Exig... [more]
ARGD1_PSESM8.781e-1132.64Acetylornithine aminotransferase 1 OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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