CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_LACPL (Acetylornithine aminotransferase OS=Lactobacillus plantarum GN=argD PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  325 LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGAT 717
            +F  Y + P  + DG+  +L D +G+ YLD   GI     G+  P +  ++  Q+  I H++ LY N      A  LA+   G  ++V+F NSGTEANE A+ +AR YTG   I++ ++++HG   G M  T
Sbjct:    4 VFPTYQRFPFAITDGQGVHLTDNHGKTYLDFTAGIGVCNFGYHQPQIQAAVTQQLTHIWHTSNLYENELQDAVAGLLAN---GEERLVYFANSGTEANEAALKLARKYTGKTGILAFQHSFHGRTYGAMSMT 132          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_BACST (Acetylornithine aminotransferase OS=Bacillus stearothermophilus GN=argD PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  322 SLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            +LF  Y++  + V   +   + D NG++YLD   GIA    GH HP+V  SI  Q+ +  H + L+      + A  L +   G+   VFF NSG EANE A+ +AR +TG + +I+ R ++HG    TM AT Q
Sbjct:    3 ALFPTYNRWNIAVQSAEGTVVTDVNGKQYLDFVSGIAVCNLGHRHPHVQKSIEQQLNQYWHVSNLFTIPIQEEVASLLVAHSAGDY--VFFCNSGAEANEAALKLARKHTGRHKVITFRQSFHGRTFATMAATGQ 135          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  325 LFHLYSKPLNVVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            +   Y++   V++ G+  Y++D NG+RYLD   GIATV  GHC+ ++V+ +  Q++++ H + LY      + AE L S++ G +   FF NSG EA E A+  AR  TG    +S    +HG   G +  T +  ++
Sbjct:   11 ILQTYTRQKVVIERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKEQLEKLIHISNLYYTTPQVELAEKL-SEIAG-MDRFFFCNSGAEAVEAALKFARRATGRKKFVSFTGDFHGRTMGALSVTHKEKFR 146          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_OCEIH (Acetylornithine aminotransferase OS=Oceanobacillus iheyensis GN=argD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  307 TFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCND---IISLRNAYHGNAAGTMGATAQ 723
            T +S ++   Y++ P+    GK  +L+D+NG +YLD   GIAT   GH    V  +I NQ+K + H + LY  H  +    A        L  VFF NSG EANE AI +A+ Y    G +D   II+   ++HG    TM ATAQ
Sbjct:    5 TKVSSAVMQTYNRFPITATKGKGSFLWDDNGEKYLDYTSGIATCNLGHVPDNVQHAISNQLKDLWHCSNLY--HIPSQEKLAALLTEYSCLDQVFFCNSGAEANEAAIKIAKKYAKDKGYDDRTEIITFEQSFHGRTGSTMAATAQ 148          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_MYCTU (Acetylornithine aminotransferase OS=Mycobacterium tuberculosis GN=argD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            P+ +  G    + D +GR Y+D  GGIA    GH HP V++++  Q+  + H++ LY        AE L + +  + +  VFF NSG EANE A  ++RL TG   +++  +A+HG   G++  T Q
Sbjct:   27 PIALASGDGAVVTDVDGRTYIDLLGGIAVNVLGHRHPAVIEAVTRQMSTLGHTSNLYATEPGIALAEELVALLGADQRTRVFFCNSGAEANEAAFKLSRL-TGRTKLVAAHDAFHGRTMGSLALTGQ 152          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_MYCBO (Acetylornithine aminotransferase OS=Mycobacterium bovis GN=argD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            P+ +  G    + D +GR Y+D  GGIA    GH HP V++++  Q+  + H++ LY        AE L + +  + +  VFF NSG EANE A  ++RL TG   +++  +A+HG   G++  T Q
Sbjct:   27 PIALASGDGAVVTDVDGRTYIDLLGGIAVNVLGHRHPAVIEAVTRQMSTLGHTSNLYATEPGIALAEELVALLGADQRTRVFFCNSGAEANEAAFKLSRL-TGRTKLVAAHDAFHGRTMGSLALTGQ 152          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_CORGL (Acetylornithine aminotransferase OS=Corynebacterium glutamicum GN=argD PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP------GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            P+ +V GK   + D+ G  Y+D   GIA    GH HP +++++ NQI ++ H + L+ +  + + AE L  +             VFF NSG EANE A  +ARL TG + I++  + +HG   G++  T Q
Sbjct:   19 PVELVSGKGATVTDDQGNVYIDLLAGIAVNALGHAHPAIIEAVTNQIGQLGHVSNLFASRPVVEVAEELIKRFSLDDATLAAQTRVFFCNSGAEANEAAFKIARL-TGRSRILAAVHGFHGRTMGSLALTGQ 149          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.546e-15
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG------CNDIISLRNAYHGNAAGTMGATAQSNWK 735
            P+ +V+GK   ++D +G++YLD   GI     GHCHP VV++I  Q + + H++ +Y        A+ L       L   FF NSG EANE AI  AR Y          +IIS+ NA+HG    T+ AT +  ++
Sbjct:   22 PVVLVEGKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKKQAETLIHTSNIYYTIPQIKLAKKLVEL--SGLDRAFFCNSGAEANEGAIKFARKYVSKVLGREGGEIISMYNAFHGRTLTTLAATPKPKYQ 155          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_PROMA (Acetylornithine aminotransferase OS=Prochlorococcus marinus GN=argD PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYHGNAAGTMGATAQSNWK 735
            PL +V G   +L+DE G++YLDA  GIAT   GH    +   +  Q+++IQH + LY      D A+ L ++   +   VFF NSG EANE AI +AR Y           I+S ++++HG     + AT Q+ ++
Sbjct:   33 PLKIVKGNGCWLWDETGKKYLDAVAGIATCSLGHSDKKLSKVLSQQLRKIQHVSNLYRIPEQEDLAQWLVNQSCAD--SVFFCNSGAEANEAAIKLARKYGQIKRGIKRPIILSAKSSFHGRTLAALSATGQTKYQ 166          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_COREF (Acetylornithine aminotransferase OS=Corynebacterium efficiens GN=argD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP------GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            P+ +V GK   + D +G  Y+D   GIA    GH HP +++++  Q+ ++ H + L+    + + A  L  +         +   VFF NSG EANE A  +ARL TG + I++  N +HG   G++  T Q
Sbjct:   26 PVELVTGKGSTVTDADGNVYIDLLAGIAVNALGHAHPAIIEAVTTQLSQLGHVSNLFATRPVVEVAAELVQRFALDDATIASQTQVFFCNSGAEANEAAFKLARL-TGRHRILAATNGFHGRTMGSLALTGQ 156          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
ARGD_LACPL5.315e-1635.61Acetylornithine aminotransferase OS=Lactobacillus ... [more]
ARGD_BACST5.315e-1637.04Acetylornithine aminotransferase OS=Bacillus stear... [more]
ARGD_ARCFU6.941e-1634.06Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ARGD_OCEIH1.184e-1538.36Acetylornithine aminotransferase OS=Oceanobacillus... [more]
ARGD_MYCTU1.184e-1534.65Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ARGD_MYCBO1.184e-1534.65Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ARGD_CORGL1.184e-1534.09Acetylornithine aminotransferase OS=Corynebacteriu... [more]
ARGD_METJA1.546e-1536.03Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_PROMA2.020e-1536.03Acetylornithine aminotransferase OS=Prochlorococcu... [more]
ARGD_COREF2.020e-1532.58Acetylornithine aminotransferase OS=Corynebacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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