CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: YHXA_BACSU (Uncharacterized aminotransferase yhxA OS=Bacillus subtilis GN=yhxA PE=3 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  376 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAAGTMGAT--AQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 843
            ++ D +GRRYLDA  G+  V  G+    + ++   Q+K + +  +   +      AE L   + G+  V+FF+NSG+EANE A  +AR Y   N        IS   AYHGN  G + AT  AQ  +K+  +  G  HA  PD YR    AD    A ++  ++
Sbjct:   45 WVTDTDGRRYLDAMSGLWCVNIGYGRKELAEAAYEQLKELPYYPLTQSHAPAIQLAEKLNEWLGGDY-VIFFSNSGSEANETAFKIARQYHLQNGDHSRYKFISRYRAYHGNTLGALSATGQAQRKYKYEPLSQGFLHAAPPDIYRNPDDADTLESANEIDRIM 207          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_AQUAE (Acetylornithine aminotransferase OS=Aquifex aeolicus GN=argD PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCN--DIISLRNAYHGNAAGTMGATAQ 723
            P+  V GK  YL+DE G+ YLD   GI     GH +P + +++  Q++++ H + LY N    + A  L        K VFF NSGTE+ E AI +AR Y    G N    IS  N++HG   G++ AT Q
Sbjct:   12 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQ 141          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD1_BORPA (Acetylornithine aminotransferase 1 OS=Bordetella parapertussis GN=argD1 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  313 LSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGAT 717
            +S +L ++Y++ P++   G+  +L+D   RRYLDA  GI   C GH HP +V +I  Q  R+ H++ +Y     A  A  LA      +  V F+NSG+EANE AI +AR Y          II++ +++HG    T+ AT
Sbjct:    1 MSSALANIYARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARRLAEL--SGMSEVLFSNSGSEANEAAIKLARYYGYKQGNTHAHIITMDSSWHGRTLATLAAT 139          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD1_BORBR (Acetylornithine aminotransferase 1 OS=Bordetella bronchiseptica GN=argD1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  313 LSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGAT 717
            +S +L ++Y++ P++   G+  +L+D   RRYLDA  GI   C GH HP +V +I  Q  R+ H++ +Y     A  A  LA      +  V F+NSG+EANE AI +AR Y          II++ +++HG    T+ AT
Sbjct:    1 MSSALANIYARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARRLAEL--SGMSEVLFSNSGSEANEAAIKLARYYGYKQGNTHAHIITMDSSWHGRTLATLAAT 139          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_STRCO (Acetylornithine aminotransferase OS=Streptomyces coelicolor GN=argD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  322 SLFHLYSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            +L + Y  P L +V G+   L+D +G+ YLD  GGIA    GH HP VVD++  QI  + H + L++       AE L     G    V+F NSG EANE A  + RL TG   +++ R  +HG   G +  T Q
Sbjct:   13 TLMNNYGTPRLPLVRGEGARLWDADGKEYLDFVGGIAVNALGHAHPAVVDAVSRQIASLGHVSNLFIAEPPVALAERLLQHF-GRDGKVYFCNSGAEANEGAFKIGRL-TGRPHMVATRGGFHGRTMGALALTGQ 145          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_PYRAE (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrobaculum aerophilum GN=argD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  349 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            + +V G MQY++D+ G+RY+D       V  GH +P +V+++  Q++ I    + +   A   F E  +  +P    VVF  N+GTEA E+AI +A+  T    I++  N++HG   G++  T    +K
Sbjct:   13 IRIVKGFMQYVWDDKGQRYIDCNTNHGVVFLGHANPKIVEAVKKQVEEIWAVPLNFATPARERFIEEFSKLLPPKFGVVFLQNTGTEAVEVAIKIAKKVTRKPTIVAFTNSFHGRTMGSLSITWNEKYK 141          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD1_BORPE (Acetylornithine aminotransferase 1 OS=Bordetella pertussis GN=argD1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  313 LSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGAT 717
            +S +L ++Y++ P++   G+  +L+D   RRYLDA  GI   C GH HP +V +I  Q  R+ H++ +Y     A  A  LA      +  V F NSG+EANE AI +AR Y          II++ +++HG    T+ AT
Sbjct:    1 MSSALANIYARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARRLAEL--SGMSEVLFNNSGSEANEAAIKLARYYGYKQGNTHAHIITMDSSWHGRTLATLAAT 139          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_DEBHA (Acetylornithine aminotransferase, mitochondrial OS=Debaryomyces hansenii GN=ARG8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 53/155 (34.19%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  307 TFLSPSLFHLYSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM--PGNLKV---VFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            T   P     Y++P NVV   GK  YL+D   R+YLD   GIA  C GH H  + + I +Q   + H + LY N    + A  L +     G +K    VF  NSGTEANE A+  AR Y         ++I+ +N++HG   G +  T    ++
Sbjct:   55 TITKPFTVTTYARP-NVVMTHGKGSYLYDLENRQYLDFSAGIAVTCLGHSHSKITEIISDQAATLMHCSNLYHNLYAGELANKLVTNTINSGGMKEAQRVFLCNSGTEANEAALKFARKYGKSFSDDKYEMITFKNSFHGRTMGALSVTPNEKYQ 208          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD2_PSESM (Acetylornithine aminotransferase 2 OS=Pseudomonas syringae pv. tomato GN=argD2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  379 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANELAIMMARL-----YTGCNDIISLRNAYHGNAAGTMGAT 717
            L+D++GR YLDA  G+A    GH HP +VD+I +Q   + H++ LY      D+ + LA K+     +  VFF NSG EANE A+ +ARL     Y     ++ + NA+HG   GT+ A+
Sbjct:   25 LWDQSGREYLDAVAGVAVTNVGHSHPMLVDAIRDQAGLLLHTSNLY----SIDWQQRLAQKLTRLAGMDRVFFNNSGAEANETALKLARLHGWHKYIEQPLVVVMENAFHGRTLGTLAAS 140          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAP (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=argD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  358 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG------CNDIISLRNAYHGNAAGTMGATAQSNW 732
            V GK   L+D+ G+ Y+D  GGIA    GHCHP +   +  Q K++ H + ++ N      A+ L S    +   VFF NSG EANE A  +AR Y+        N IIS  N++HG    T+    Q+ +
Sbjct:   29 VKGKGSRLWDQKGKEYIDFSGGIAVTSLGHCHPVLNKVLRQQSKKLWHISNIFTNEPALRLADKLISSSFASR--VFFANSGAEANEAAFKLARYYSSKIYNLKKNKIISFYNSFHGRTFFTVSVGGQAKY 157          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
YHXA_BACSU2.638e-1533.54Uncharacterized aminotransferase yhxA OS=Bacillus ... [more]
ARGD_AQUAE2.638e-1538.17Acetylornithine aminotransferase OS=Aquifex aeolic... [more]
ARGD1_BORPA2.638e-1536.17Acetylornithine aminotransferase 1 OS=Bordetella p... [more]
ARGD1_BORBR2.638e-1536.17Acetylornithine aminotransferase 1 OS=Bordetella b... [more]
ARGD_STRCO3.445e-1537.78Acetylornithine aminotransferase OS=Streptomyces c... [more]
ARGD_PYRAE3.445e-1531.78Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD1_BORPE3.445e-1536.17Acetylornithine aminotransferase 1 OS=Bordetella p... [more]
ARGD_DEBHA4.499e-1534.19Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD2_PSESM4.499e-1539.17Acetylornithine aminotransferase 2 OS=Pseudomonas ... [more]
ARGD_BUCAP5.876e-1535.88Acetylornithine/succinyldiaminopimelate aminotrans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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