CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERPS (Succinylornithine transaminase OS=Yersinia pseudotuberculosis GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D
Sbjct:   27 VVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERPG (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D
Sbjct:   27 VVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERPE (Succinylornithine transaminase OS=Yersinia pestis GN=astC PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D
Sbjct:   27 VVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERPA (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D
Sbjct:   27 VVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ASTC_YERP3 (Succinylornithine transaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  355 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPD 780
            VV G+   L+D+ G+ Y+D  GGIA    GH HP V  +++ Q  ++ H    Y N  +   A+ L        + VFF NSG EANE A+ +AR Y               N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D
Sbjct:   27 VVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDAT--FAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFND 180          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_AERPE (Acetylornithine/acetyl-lysine aminotransferase OS=Aeropyrum pernix GN=argD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 39/132 (29.55%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  349 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 744
            L +V G MQY++D++GR+YLD   G      GH +P +V+++V Q + +  ++  +   ++ +     +   P   + + F N+GTEA E A+  A L TG   I++L+N++HG    ++  T    ++  V
Sbjct:   16 LRIVKGSMQYVWDDSGRKYLDCHAGHGAAFLGHSNPAIVEAVVRQARELVAASSSFSTPSLEEALTEFSRIAPPWAEEIVFLNTGTEAVEAALKAAWLATGKRGIVALKNSFHGRTLASLSVTWNPRYRRGV 147          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_CITK8 (Putrescine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=patA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF+NSGTE+ E A+ +A+ Y    G    I+   A+HG + G++ ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFSNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGSLSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ENT38 (Putrescine aminotransferase OS=Enterobacter sp. (strain 638) GN=patA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF+NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFSNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_THEEB (Acetylornithine aminotransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=argD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  346 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            P+ +V G+   ++D+ GR YLD   GIAT   GH HP +V+++  Q++ + H + LY        A+ L +   G+   VFF NSG EANE AI +AR Y           II+ + ++HG    T+ AT Q  ++
Sbjct:   26 PITLVRGEGCRVWDDQGRSYLDFVAGIATCTLGHAHPALVETVSRQMQTLHHVSNLYYIPQQGALAQWLVAHSCGDR--VFFCNSGAEANEAAIKLARKYAHTVRHIANPIIITAQASFHGRTLATITATGQPKYQ 159          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_STRAW (Acetylornithine aminotransferase OS=Streptomyces avermitilis GN=argD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  322 SLFHLYSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 723
            +L + Y  P L +V G    L+D +G+ YLD  GGIA    GH HP +V+++  QI  + H + L++       AE L  ++ G    V+F NSG EANE A  + RL TG + +++ +  +HG   G +  T Q
Sbjct:   17 ALMNNYGTPRLPLVRGAGTRLWDADGKEYLDFVGGIAVNALGHAHPAIVEAVSTQIASLGHVSNLFVAEPPVALAERLL-QLFGRDGRVYFCNSGAEANEAAFKIGRL-TGRSHMVATQGGFHGRTMGALALTGQ 149          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
ASTC_YERPS7.674e-1533.33Succinylornithine transaminase OS=Yersinia pseudot... [more]
ASTC_YERPG7.674e-1533.33Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERPE7.674e-1533.33Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERPA7.674e-1533.33Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERP37.674e-1533.33Succinylornithine transaminase OS=Yersinia pseudot... [more]
ARGD_AERPE7.674e-1529.55Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
PAT_CITK81.309e-1437.50Putrescine aminotransferase OS=Citrobacter koseri ... [more]
PAT_ENT381.710e-1437.50Putrescine aminotransferase OS=Enterobacter sp. (s... [more]
ARGD_THEEB2.233e-1435.29Acetylornithine aminotransferase OS=Thermosynechoc... [more]
ARGD_STRAW2.233e-1435.56Acetylornithine aminotransferase OS=Streptomyces a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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