CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_NEIMB (Acetylornithine aminotransferase OS=Neisseria meningitidis serogroup B GN=argD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  379 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNW 732
            ++D  GR Y+D  GGIA    GHCHP +VD++  Q+ ++ H + +Y        A+ LA K+  N     VFF NSG+EANE A+ +AR Y       G ++I++  N++HG    T+    Q  +
Sbjct:   24 VWDTKGREYIDFSGGIAVNALGHCHPALVDALNAQMHKLWHISNIYTTRP----AQELAQKLVANSFADKVFFCNSGSEANEAALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKY 145          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_NEIMA (Acetylornithine aminotransferase OS=Neisseria meningitidis serogroup A GN=argD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  379 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNW 732
            ++D  GR Y+D  GGIA    GHCHP +VD++  Q+ ++ H + +Y        A+ LA K+  N     VFF NSG+EANE A+ +AR Y       G ++I++  N++HG    T+    Q  +
Sbjct:   24 VWDTEGREYIDFSGGIAVNALGHCHPALVDALNAQMHKLWHISNIYTTRP----AQELAQKLVANSFADKVFFCNSGSEANEAALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKY 145          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SHIBS (Putrescine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALTY (Putrescine aminotransferase OS=Salmonella typhimurium GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALTI (Putrescine aminotransferase OS=Salmonella typhi GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALSV (Putrescine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALPK (Putrescine aminotransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALPB (Putrescine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALAPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_SALPA (Putrescine aminotransferase OS=Salmonella paratyphi A GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
ARGD_NEIMB2.233e-1435.71Acetylornithine aminotransferase OS=Neisseria meni... [more]
ARGD_NEIMA2.233e-1435.71Acetylornithine aminotransferase OS=Neisseria meni... [more]
PAT_SHISS2.916e-1437.50Putrescine aminotransferase OS=Shigella sonnei (st... [more]
PAT_SHIBS2.916e-1437.50Putrescine aminotransferase OS=Shigella boydii ser... [more]
PAT_SALTY2.916e-1437.50Putrescine aminotransferase OS=Salmonella typhimur... [more]
PAT_SALTI2.916e-1437.50Putrescine aminotransferase OS=Salmonella typhi GN... [more]
PAT_SALSV2.916e-1437.50Putrescine aminotransferase OS=Salmonella schwarze... [more]
PAT_SALPK2.916e-1437.50Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPB2.916e-1437.50Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPA2.916e-1437.50Putrescine aminotransferase OS=Salmonella paratyph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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