CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECODH (Putrescine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOBW (Putrescine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECO7I (Putrescine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFT (Acetylornithine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=argD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  295 AKRKTFLSPSLFHL-YSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-------NDIISLRNAYHGNAAGTMGATAQSNWK 735
            A  ++ LS S ++L   +P  VV   G+   ++DE GR YLD   GIA  C GHC P +V ++V Q  R+ H++ ++ +      A+ L   +    + VF  +SGTEANE AI + R +            I++ R ++HG   G + ATAQ  ++
Sbjct:    3 AVSESVLSLSRYYLPVYRPCQVVLVRGQGSRVWDEQGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRLWHTSNVFYSEPSLRLAQELVD-VSRFAERVFLCSSGTEANEAAIKLVRKWAAAQGRLPEHRTIVTFRGSFHGRTLGAVTATAQPKYQ 158          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: ARGD_ANASP (Acetylornithine aminotransferase OS=Anabaena sp. (strain PCC 7120) GN=argD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  259 PPYDGPSADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNA-YHGNAAGTMGATAQSNWK--FNVVQTGVHH 765
            PP  G +A    +        S+   Y + PL +  G    ++D  G+ YLD   GIAT   GH HP +V+++  QI+++ H + LY      + A+ +      +   VFF NSG EANE AI +AR Y          II   NA +HG    T+ AT Q+ ++  F+ +  G H+
Sbjct:   13 PPESGSAASSPFSTDS--FDASVMSTYGRFPLALERGAGCRVWDTQGKEYLDFVAGIATCTLGHAHPAMVEAVTRQIQKLHHVSNLYYIPEQGELAQWIIQHSCADR--VFFCNSGAEANEAAIKLARKYAHTVLDIEKPIILTANASFHGRTLATITATGQAKYQKYFDPLVPGFHY 186          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOUT (Putrescine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: PAT_ECOLU (Putrescine aminotransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  364 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI-KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHGNAAGTMGATAQSNWK 735
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ K+  HS  L L+   A  A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + ATA+S ++
Sbjct:   71 GGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR 197          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PAT_ECODH2.916e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOBW2.916e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO7I2.916e-1437.50Putrescine aminotransferase OS=Escherichia coli O7... [more]
ARGD_XYLFT2.916e-1433.12Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_ANASP3.809e-1432.02Acetylornithine aminotransferase OS=Anabaena sp. (... [more]
PAT_ESCF34.974e-1437.50Putrescine aminotransferase OS=Escherichia ferguso... [more]
PAT_ECOUT4.974e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSM4.974e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSE4.974e-1437.50Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLU4.974e-1437.50Putrescine aminotransferase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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